Strain Fitness in Sinorhizobium meliloti 1021 around SMc03227
Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | D-Cycloserine 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,335,743 | + | -0.2 | |||
3,335,768 | + | +0.5 | |||
3,335,769 | - | -0.1 | |||
3,335,769 | - | -0.2 | |||
3,335,769 | - | -1.0 | |||
3,335,769 | - | -1.2 | |||
3,335,907 | + | SMc03226 | 0.12 | +1.4 | |
3,335,908 | - | SMc03226 | 0.13 | +0.7 | |
3,335,908 | - | SMc03226 | 0.13 | +0.3 | |
3,335,943 | + | SMc03226 | 0.18 | -0.4 | |
3,335,944 | - | SMc03226 | 0.18 | -1.4 | |
3,336,037 | - | SMc03226 | 0.32 | -0.4 | |
3,336,057 | + | SMc03226 | 0.35 | +0.7 | |
3,336,057 | + | SMc03226 | 0.35 | -0.8 | |
3,336,058 | - | SMc03226 | 0.35 | -0.5 | |
3,336,089 | - | SMc03226 | 0.40 | -0.2 | |
3,336,484 | + | -2.3 | |||
3,336,484 | + | -0.2 | |||
3,336,585 | + | SMc03227 | 0.21 | -1.8 | |
3,336,773 | + | SMc03227 | 0.64 | -1.0 | |
3,336,775 | + | SMc03227 | 0.65 | -3.6 | |
3,336,828 | - | SMc03227 | 0.77 | -1.3 | |
3,336,965 | + | SMc03228 | 0.11 | -1.7 | |
3,336,965 | + | SMc03228 | 0.11 | -1.2 | |
3,336,965 | + | SMc03228 | 0.11 | +0.6 | |
3,336,966 | - | SMc03228 | 0.11 | +0.1 | |
3,336,966 | - | SMc03228 | 0.11 | +0.5 | |
3,336,966 | - | SMc03228 | 0.11 | -0.4 | |
3,337,148 | + | SMc03228 | 0.73 | -0.7 |
Or see this region's nucleotide sequence