Strain Fitness in Sinorhizobium meliloti 1021 around SMc03206

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03205 and SMc03206 are separated by 163 nucleotidesSMc03206 and SMc03207 are separated by 11 nucleotides SMc03205: SMc03205 - formyltetrahydrofolate deformylase, at 3,170,213 to 3,171,097 SMc03205 SMc03206: SMc03206 - maleylacetoacetate isomerase (glutathione transferase zeta 1) protein, at 3,171,261 to 3,171,914 SMc03206 SMc03207: SMc03207 - aromatic amino acid degradation protein, at 3,171,926 to 3,172,942 SMc03207 Position (kb) 3171 3172Strain fitness (log2 ratio) -3 -2 -1 0 1at 3170.788 kb on - strand, within SMc03205at 3171.009 kb on + strandat 3171.009 kb on + strandat 3171.009 kb on + strandat 3171.010 kb on - strandat 3171.010 kb on - strandat 3171.010 kb on - strandat 3171.010 kb on - strandat 3171.010 kb on - strandat 3171.087 kb on + strandat 3171.087 kb on + strandat 3171.087 kb on + strandat 3171.088 kb on - strandat 3171.088 kb on - strandat 3171.088 kb on - strandat 3171.139 kb on - strandat 3171.262 kb on + strandat 3171.324 kb on + strandat 3171.325 kb on - strandat 3171.379 kb on + strand, within SMc03206at 3171.379 kb on + strand, within SMc03206at 3171.380 kb on - strand, within SMc03206at 3171.380 kb on - strand, within SMc03206at 3171.461 kb on + strand, within SMc03206at 3171.461 kb on + strand, within SMc03206at 3171.461 kb on + strand, within SMc03206at 3171.462 kb on - strand, within SMc03206at 3171.462 kb on - strand, within SMc03206at 3171.462 kb on - strand, within SMc03206at 3171.601 kb on + strand, within SMc03206at 3171.602 kb on - strand, within SMc03206at 3171.602 kb on - strand, within SMc03206at 3171.602 kb on - strand, within SMc03206at 3171.679 kb on + strand, within SMc03206at 3171.680 kb on - strand, within SMc03206at 3171.680 kb on - strand, within SMc03206at 3171.853 kb on + strandat 3171.854 kb on - strandat 3171.874 kb on + strandat 3171.874 kb on + strandat 3171.939 kb on + strandat 3172.092 kb on + strand, within SMc03207at 3172.381 kb on - strand, within SMc03207at 3172.381 kb on - strand, within SMc03207at 3172.451 kb on + strand, within SMc03207at 3172.605 kb on + strand, within SMc03207at 3172.605 kb on + strand, within SMc03207at 3172.605 kb on + strand, within SMc03207at 3172.683 kb on + strand, within SMc03207at 3172.684 kb on - strand, within SMc03207at 3172.684 kb on - strand, within SMc03207at 3172.852 kb on + strandat 3172.852 kb on + strandat 3172.852 kb on + strandat 3172.853 kb on - strandat 3172.853 kb on - strandat 3172.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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3,170,788 - SMc03205 0.65 +0.3
3,171,009 + -0.8
3,171,009 + -1.1
3,171,009 + +1.0
3,171,010 - +0.0
3,171,010 - +0.4
3,171,010 - +1.0
3,171,010 - -1.4
3,171,010 - -0.2
3,171,087 + +0.0
3,171,087 + -0.2
3,171,087 + -0.3
3,171,088 - +1.2
3,171,088 - +0.3
3,171,088 - +0.4
3,171,139 - -0.4
3,171,262 + -0.8
3,171,324 + +0.1
3,171,325 - -0.4
3,171,379 + SMc03206 0.18 -0.4
3,171,379 + SMc03206 0.18 +0.6
3,171,380 - SMc03206 0.18 +0.6
3,171,380 - SMc03206 0.18 +0.6
3,171,461 + SMc03206 0.31 +0.8
3,171,461 + SMc03206 0.31 -0.1
3,171,461 + SMc03206 0.31 -0.4
3,171,462 - SMc03206 0.31 -0.4
3,171,462 - SMc03206 0.31 -0.5
3,171,462 - SMc03206 0.31 -0.3
3,171,601 + SMc03206 0.52 -0.8
3,171,602 - SMc03206 0.52 -0.5
3,171,602 - SMc03206 0.52 -1.4
3,171,602 - SMc03206 0.52 -0.7
3,171,679 + SMc03206 0.64 -0.6
3,171,680 - SMc03206 0.64 +0.1
3,171,680 - SMc03206 0.64 -1.9
3,171,853 + -2.8
3,171,854 - +0.3
3,171,874 + -0.2
3,171,874 + +0.7
3,171,939 + +0.2
3,172,092 + SMc03207 0.16 +0.3
3,172,381 - SMc03207 0.45 -1.8
3,172,381 - SMc03207 0.45 +0.8
3,172,451 + SMc03207 0.52 -0.1
3,172,605 + SMc03207 0.67 +0.1
3,172,605 + SMc03207 0.67 -0.5
3,172,605 + SMc03207 0.67 +0.2
3,172,683 + SMc03207 0.74 -0.7
3,172,684 - SMc03207 0.75 -0.3
3,172,684 - SMc03207 0.75 -2.1
3,172,852 + -0.1
3,172,852 + +1.3
3,172,852 + -0.7
3,172,853 - +0.6
3,172,853 - +1.7
3,172,853 - -1.0

Or see this region's nucleotide sequence