Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03039 and SMc03040 are separated by 317 nucleotides SMc03040 and SMc03041 are separated by 355 nucleotides
SMc03039: SMc03039 - flagellin D protein, at 734,262 to 735,467
SMc03039
SMc03040: SMc03040 - flagellin protein, at 735,785 to 736,750
SMc03040
SMc03041: SMc03041 - hypothetical protein, at 737,106 to 737,753
SMc03041
SMc03042: SMc03042 - flagellar motor protein MotB, at 737,750 to 738,934
SMc03042
Position (kb) 735
736
737 Strain fitness (log2 ratio) -2
-1
0
1
2 at 734.821 kb on - strand, within SMc03039 at 734.880 kb on + strand, within SMc03039 at 734.881 kb on - strand, within SMc03039 at 734.981 kb on + strand, within SMc03039 at 734.988 kb on + strand, within SMc03039 at 734.989 kb on - strand, within SMc03039 at 734.991 kb on - strand, within SMc03039 at 735.066 kb on + strand, within SMc03039 at 735.066 kb on + strand, within SMc03039 at 735.066 kb on + strand, within SMc03039 at 735.155 kb on + strand, within SMc03039 at 735.155 kb on + strand, within SMc03039 at 735.583 kb on - strand at 735.583 kb on - strand at 735.604 kb on - strand at 735.850 kb on + strand at 735.851 kb on - strand at 735.851 kb on - strand at 735.921 kb on - strand, within SMc03040 at 736.010 kb on - strand, within SMc03040 at 736.010 kb on - strand, within SMc03040 at 736.017 kb on - strand, within SMc03040 at 736.030 kb on + strand, within SMc03040 at 736.102 kb on + strand, within SMc03040 at 736.102 kb on + strand, within SMc03040 at 736.187 kb on + strand, within SMc03040 at 736.187 kb on + strand, within SMc03040 at 736.187 kb on + strand, within SMc03040 at 736.188 kb on - strand, within SMc03040 at 736.188 kb on - strand, within SMc03040 at 736.189 kb on + strand, within SMc03040 at 736.190 kb on - strand, within SMc03040 at 736.262 kb on - strand, within SMc03040 at 736.281 kb on - strand, within SMc03040 at 736.281 kb on - strand, within SMc03040 at 736.312 kb on - strand, within SMc03040 at 736.312 kb on - strand, within SMc03040 at 736.394 kb on + strand, within SMc03040 at 736.394 kb on + strand, within SMc03040 at 736.395 kb on - strand, within SMc03040 at 736.395 kb on - strand, within SMc03040 at 736.397 kb on + strand, within SMc03040 at 736.398 kb on - strand, within SMc03040 at 736.398 kb on - strand, within SMc03040 at 736.859 kb on - strand at 736.877 kb on + strand at 736.877 kb on + strand at 736.878 kb on - strand at 736.975 kb on + strand at 737.023 kb on - strand at 737.128 kb on - strand at 737.182 kb on - strand, within SMc03041 at 737.580 kb on - strand, within SMc03041 at 737.729 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 734,821 - SMc03039 0.46 +0.5 734,880 + SMc03039 0.51 -0.9 734,881 - SMc03039 0.51 +0.1 734,981 + SMc03039 0.60 -0.1 734,988 + SMc03039 0.60 -2.4 734,989 - SMc03039 0.60 -0.5 734,991 - SMc03039 0.60 -0.3 735,066 + SMc03039 0.67 -0.5 735,066 + SMc03039 0.67 -0.3 735,066 + SMc03039 0.67 -0.5 735,155 + SMc03039 0.74 -0.0 735,155 + SMc03039 0.74 +1.2 735,583 - -0.3 735,583 - -0.1 735,604 - +1.0 735,850 + -1.0 735,851 - -0.2 735,851 - -0.3 735,921 - SMc03040 0.14 -0.8 736,010 - SMc03040 0.23 -0.0 736,010 - SMc03040 0.23 +1.6 736,017 - SMc03040 0.24 -1.2 736,030 + SMc03040 0.25 +1.0 736,102 + SMc03040 0.33 -0.3 736,102 + SMc03040 0.33 +0.1 736,187 + SMc03040 0.42 -0.6 736,187 + SMc03040 0.42 +0.4 736,187 + SMc03040 0.42 -1.4 736,188 - SMc03040 0.42 -0.3 736,188 - SMc03040 0.42 +0.5 736,189 + SMc03040 0.42 -0.1 736,190 - SMc03040 0.42 -0.8 736,262 - SMc03040 0.49 +0.8 736,281 - SMc03040 0.51 -0.6 736,281 - SMc03040 0.51 -0.6 736,312 - SMc03040 0.55 +0.3 736,312 - SMc03040 0.55 -0.4 736,394 + SMc03040 0.63 -1.8 736,394 + SMc03040 0.63 -0.2 736,395 - SMc03040 0.63 -1.1 736,395 - SMc03040 0.63 -1.3 736,397 + SMc03040 0.63 -0.6 736,398 - SMc03040 0.63 -1.2 736,398 - SMc03040 0.63 -0.7 736,859 - -0.0 736,877 + -0.1 736,877 + -1.4 736,878 - -0.2 736,975 + -0.4 737,023 - -0.1 737,128 - +0.3 737,182 - SMc03041 0.12 +0.2 737,580 - SMc03041 0.73 +2.3 737,729 + -0.2
Or see this region's nucleotide sequence