Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02899 and SMc02900 are separated by 170 nucleotides SMc02900 and SMc02901 are separated by 131 nucleotides SMc02901 and SMc02902 are separated by 92 nucleotides SMc02902 and SMc02903 are separated by 6 nucleotides SMc02903 and SMc02904 are separated by 2 nucleotides
SMc02899: SMc02899 - prephenate dehydratase, at 255,981 to 256,835
SMc02899
SMc02900: SMc02900 - hypothetical protein, at 257,006 to 257,143
SMc02900
SMc02901: SMc02901 - hypothetical protein, at 257,275 to 257,643
SMc02901
SMc02902: SMc02902 - transcriptional regulator, at 257,736 to 258,428
SMc02902
SMc02903: SMc02903 - hypothetical protein, at 258,435 to 259,415
SMc02903
SMc02904: SMc02904 - hypothetical protein, at 259,418 to 260,143
SMc02904
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.739 kb on - strand, within SMc02899 at 256.953 kb on + strand at 256.953 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.977 kb on - strand at 256.977 kb on - strand at 256.977 kb on - strand at 257.037 kb on + strand, within SMc02900 at 257.101 kb on + strand, within SMc02900 at 257.101 kb on + strand, within SMc02900 at 257.141 kb on + strand at 257.229 kb on + strand at 257.243 kb on + strand at 257.429 kb on - strand, within SMc02901 at 257.615 kb on + strand at 257.615 kb on + strand at 257.615 kb on + strand at 257.616 kb on - strand at 257.969 kb on - strand, within SMc02902 at 257.969 kb on - strand, within SMc02902 at 258.253 kb on + strand, within SMc02902 at 258.276 kb on + strand, within SMc02902 at 258.276 kb on + strand, within SMc02902 at 258.277 kb on - strand, within SMc02902 at 258.277 kb on - strand, within SMc02902 at 258.277 kb on - strand, within SMc02902 at 258.306 kb on + strand, within SMc02902 at 258.306 kb on + strand, within SMc02902 at 258.306 kb on + strand, within SMc02902 at 258.306 kb on + strand, within SMc02902 at 258.316 kb on + strand, within SMc02902 at 258.637 kb on + strand, within SMc02903 at 258.637 kb on + strand, within SMc02903 at 258.689 kb on - strand, within SMc02903 at 258.790 kb on + strand, within SMc02903 at 258.790 kb on + strand, within SMc02903 at 258.848 kb on - strand, within SMc02903 at 258.908 kb on + strand, within SMc02903 at 258.908 kb on + strand, within SMc02903 at 259.052 kb on - strand, within SMc02903
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 256,738 + SMc02899 0.89 -0.3 256,738 + SMc02899 0.89 -2.2 256,738 + SMc02899 0.89 +0.2 256,738 + SMc02899 0.89 +0.4 256,738 + SMc02899 0.89 +0.2 256,738 + SMc02899 0.89 +0.7 256,739 - SMc02899 0.89 +0.1 256,953 + -0.1 256,953 + -0.5 256,976 + -1.0 256,976 + +0.2 256,977 - +1.0 256,977 - -0.6 256,977 - -0.8 257,037 + SMc02900 0.22 -0.5 257,101 + SMc02900 0.69 -1.4 257,101 + SMc02900 0.69 -0.1 257,141 + -2.0 257,229 + -0.0 257,243 + +0.3 257,429 - SMc02901 0.42 -0.8 257,615 + +0.6 257,615 + +0.2 257,615 + -0.4 257,616 - -1.8 257,969 - SMc02902 0.34 -0.5 257,969 - SMc02902 0.34 -0.3 258,253 + SMc02902 0.75 -1.3 258,276 + SMc02902 0.78 +0.1 258,276 + SMc02902 0.78 +0.5 258,277 - SMc02902 0.78 +0.0 258,277 - SMc02902 0.78 +0.1 258,277 - SMc02902 0.78 -2.2 258,306 + SMc02902 0.82 -1.0 258,306 + SMc02902 0.82 -0.2 258,306 + SMc02902 0.82 +1.4 258,306 + SMc02902 0.82 -1.7 258,316 + SMc02902 0.84 -2.4 258,637 + SMc02903 0.21 -0.2 258,637 + SMc02903 0.21 -1.9 258,689 - SMc02903 0.26 +0.2 258,790 + SMc02903 0.36 +0.7 258,790 + SMc02903 0.36 -0.7 258,848 - SMc02903 0.42 +0.6 258,908 + SMc02903 0.48 -0.1 258,908 + SMc02903 0.48 +0.1 259,052 - SMc02903 0.63 +0.9
Or see this region's nucleotide sequence