Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02861 and SMc02862 overlap by 1 nucleotides SMc02862 and SMc02863 are separated by 234 nucleotides SMc02863 and SMc02864 are separated by 38 nucleotides SMc02864 and SMc02865 are separated by 7 nucleotides
SMc02861: SMc02861 - phosphate transporter, at 214,914 to 215,918
SMc02861
SMc02862: SMc02862 - Pit accessory protein, at 215,918 to 216,562
SMc02862
SMc02863: SMc02863 - recombination protein F, at 216,797 to 217,921
SMc02863
SMc02864: SMc02864 - molybdopterin biosynthesis protein MoeB, at 217,960 to 218,724
SMc02864
SMc02865: SMc02865 - acetyltransferase, at 218,732 to 219,202
SMc02865
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.997 kb on + strand, within SMc02862 at 216.017 kb on - strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.765 kb on + strand at 216.766 kb on - strand at 216.766 kb on - strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand at 217.157 kb on - strand, within SMc02863 at 217.536 kb on - strand, within SMc02863 at 217.723 kb on + strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.886 kb on + strand at 217.886 kb on + strand at 217.886 kb on + strand at 218.332 kb on + strand, within SMc02864 at 218.332 kb on + strand, within SMc02864 at 218.333 kb on - strand, within SMc02864 at 218.367 kb on + strand, within SMc02864 at 218.375 kb on - strand, within SMc02864 at 218.570 kb on + strand, within SMc02864 at 218.669 kb on - strand at 218.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 215,997 + SMc02862 0.12 -0.3 216,017 - SMc02862 0.15 -0.9 216,018 + SMc02862 0.16 +1.3 216,018 + SMc02862 0.16 -0.8 216,018 + SMc02862 0.16 +0.0 216,019 - SMc02862 0.16 -1.1 216,019 - SMc02862 0.16 +0.4 216,019 - SMc02862 0.16 +0.3 216,019 - SMc02862 0.16 -1.3 216,019 - SMc02862 0.16 -1.7 216,765 + -1.2 216,766 - -1.0 216,766 - -0.5 216,848 + -1.0 216,848 + -2.8 216,848 + -0.6 216,848 + +0.3 216,848 + -1.2 216,849 - -0.3 216,849 - -0.6 216,849 - -0.7 216,849 - -0.7 217,157 - SMc02863 0.32 -0.8 217,536 - SMc02863 0.66 +0.9 217,723 + SMc02863 0.82 -0.6 217,724 - SMc02863 0.82 -1.1 217,724 - SMc02863 0.82 -2.5 217,724 - SMc02863 0.82 -1.5 217,886 + +0.1 217,886 + +1.0 217,886 + +0.2 218,332 + SMc02864 0.49 -0.2 218,332 + SMc02864 0.49 +2.0 218,333 - SMc02864 0.49 -0.3 218,367 + SMc02864 0.53 +1.3 218,375 - SMc02864 0.54 +0.6 218,570 + SMc02864 0.80 +0.4 218,669 - -0.0 218,669 - +0.2
Or see this region's nucleotide sequence