Strain Fitness in Sinorhizobium meliloti 1021 around SMc02837

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02836 and SMc02837 are separated by 17 nucleotidesSMc02837 and SMc02838 are separated by 30 nucleotidesSMc02838 and SMc02937 are separated by 92 nucleotides SMc02836: SMc02836 - ABC transporter ATP-binding protein, at 185,048 to 186,853 SMc02836 SMc02837: SMc02837 - dihydrodipicolinate reductase, at 186,871 to 187,689 SMc02837 SMc02838: SMc02838 - phosphoglyceromutase, at 187,720 to 188,355 SMc02838 SMc02937: SMc02937 - partial transposase for insertion sequence element ISRM5, at 188,448 to 188,747 SMc02937 Position (kb) 186 187 188Strain fitness (log2 ratio) -1 0 1at 187.912 kb on - strand, within SMc02838at 187.990 kb on + strand, within SMc02838at 188.055 kb on + strand, within SMc02838at 188.056 kb on - strand, within SMc02838at 188.056 kb on - strand, within SMc02838at 188.135 kb on - strand, within SMc02838at 188.337 kb on + strandat 188.337 kb on + strandat 188.388 kb on + strandat 188.405 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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187,912 - SMc02838 0.30 +0.1
187,990 + SMc02838 0.42 +0.5
188,055 + SMc02838 0.53 +0.4
188,056 - SMc02838 0.53 +0.0
188,056 - SMc02838 0.53 +0.3
188,135 - SMc02838 0.65 -0.3
188,337 + -0.8
188,337 + +1.2
188,388 + -0.6
188,405 - -1.0

Or see this region's nucleotide sequence