Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02606 and SMc02607 overlap by 4 nucleotides SMc02607 and SMc02608 are separated by 25 nucleotides SMc02608 and SMc02609 are separated by 94 nucleotides
SMc02606: SMc02606 - sarcosine oxidase subunit alpha, at 97,908 to 100,871
SMc02606
SMc02607: SMc02607 - sarcosine oxidase subunit delta, at 100,868 to 101,146
SMc02607
SMc02608: SMc02608 - sarcosine oxidase subunit beta, at 101,172 to 102,422
SMc02608
SMc02609: SMc02609 - transcriptional regulator, at 102,517 to 103,491
SMc02609
Position (kb) 101
102
103 Strain fitness (log2 ratio) -1
0
1
2 at 100.387 kb on + strand, within SMc02606 at 100.388 kb on - strand, within SMc02606 at 100.408 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.454 kb on - strand, within SMc02606 at 100.496 kb on - strand, within SMc02606 at 100.498 kb on + strand, within SMc02606 at 100.499 kb on - strand, within SMc02606 at 100.600 kb on + strand at 100.601 kb on - strand at 100.601 kb on - strand at 100.601 kb on - strand at 100.714 kb on + strand at 100.861 kb on + strand at 100.861 kb on + strand at 100.861 kb on + strand at 100.862 kb on - strand at 101.332 kb on + strand, within SMc02608 at 101.332 kb on + strand, within SMc02608 at 101.332 kb on + strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.354 kb on - strand, within SMc02608 at 101.364 kb on + strand, within SMc02608 at 101.415 kb on - strand, within SMc02608 at 101.528 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.858 kb on - strand, within SMc02608 at 101.858 kb on - strand, within SMc02608 at 101.981 kb on - strand, within SMc02608 at 102.034 kb on + strand, within SMc02608 at 102.034 kb on + strand, within SMc02608 at 102.148 kb on + strand, within SMc02608 at 102.175 kb on + strand, within SMc02608 at 102.176 kb on - strand, within SMc02608 at 102.225 kb on - strand, within SMc02608 at 102.226 kb on + strand, within SMc02608 at 102.226 kb on + strand, within SMc02608 at 102.227 kb on - strand, within SMc02608 at 102.227 kb on - strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.437 kb on - strand at 102.458 kb on + strand at 102.592 kb on + strand at 102.649 kb on + strand, within SMc02609 at 102.750 kb on + strand, within SMc02609 at 102.750 kb on + strand, within SMc02609 at 102.796 kb on - strand, within SMc02609 at 102.858 kb on - strand, within SMc02609 at 102.858 kb on - strand, within SMc02609 at 103.099 kb on + strand, within SMc02609 at 103.100 kb on - strand, within SMc02609 at 103.394 kb on - strand at 103.394 kb on - strand at 103.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 100,387 + SMc02606 0.84 -1.7 100,388 - SMc02606 0.84 -0.1 100,408 + SMc02606 0.84 -0.6 100,453 + SMc02606 0.86 -0.5 100,453 + SMc02606 0.86 +1.0 100,453 + SMc02606 0.86 -0.2 100,454 - SMc02606 0.86 +0.1 100,496 - SMc02606 0.87 +0.1 100,498 + SMc02606 0.87 -0.7 100,499 - SMc02606 0.87 +0.1 100,600 + -0.5 100,601 - +0.8 100,601 - -0.0 100,601 - +1.7 100,714 + -0.1 100,861 + +0.8 100,861 + +1.0 100,861 + -0.1 100,862 - +0.3 101,332 + SMc02608 0.13 -1.6 101,332 + SMc02608 0.13 -0.8 101,332 + SMc02608 0.13 -1.0 101,333 - SMc02608 0.13 -1.6 101,333 - SMc02608 0.13 -0.6 101,333 - SMc02608 0.13 -0.0 101,353 + SMc02608 0.14 -0.0 101,353 + SMc02608 0.14 +0.2 101,353 + SMc02608 0.14 -1.2 101,354 - SMc02608 0.15 -0.5 101,364 + SMc02608 0.15 -0.9 101,415 - SMc02608 0.19 -0.9 101,528 - SMc02608 0.28 -0.2 101,582 - SMc02608 0.33 -0.3 101,582 - SMc02608 0.33 +0.1 101,857 + SMc02608 0.55 +0.1 101,857 + SMc02608 0.55 -1.5 101,858 - SMc02608 0.55 -0.1 101,858 - SMc02608 0.55 +0.4 101,981 - SMc02608 0.65 -0.7 102,034 + SMc02608 0.69 -0.9 102,034 + SMc02608 0.69 -0.2 102,148 + SMc02608 0.78 -0.0 102,175 + SMc02608 0.80 +0.2 102,176 - SMc02608 0.80 -0.2 102,225 - SMc02608 0.84 +0.7 102,226 + SMc02608 0.84 -0.7 102,226 + SMc02608 0.84 +0.8 102,227 - SMc02608 0.84 -1.0 102,227 - SMc02608 0.84 -1.3 102,280 + SMc02608 0.89 -0.7 102,280 + SMc02608 0.89 -0.4 102,280 + SMc02608 0.89 -0.7 102,281 - SMc02608 0.89 -1.2 102,281 - SMc02608 0.89 +0.1 102,281 - SMc02608 0.89 -0.2 102,281 - SMc02608 0.89 +0.6 102,437 - +1.8 102,458 + -0.2 102,592 + -0.2 102,649 + SMc02609 0.14 +0.7 102,750 + SMc02609 0.24 +0.1 102,750 + SMc02609 0.24 -0.2 102,796 - SMc02609 0.29 +0.0 102,858 - SMc02609 0.35 +0.7 102,858 - SMc02609 0.35 -0.6 103,099 + SMc02609 0.60 -0.4 103,100 - SMc02609 0.60 +0.2 103,394 - -0.0 103,394 - -0.9 103,394 - -0.2
Or see this region's nucleotide sequence