Strain Fitness in Sinorhizobium meliloti 1021 around SMc02593

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02591 and SMc02592 overlap by 4 nucleotidesSMc02592 and SMc02593 overlap by 4 nucleotidesSMc02593 and SMc02594 are separated by 89 nucleotidesSMc02594 and SMc02595 are separated by 29 nucleotides SMc02591: SMc02591 - hypothetical protein, at 89,374 to 89,913 SMc02591 SMc02592: SMc02592 - hypothetical protein, at 89,910 to 90,503 SMc02592 SMc02593: SMc02593 - hypothetical protein, at 90,500 to 91,132 SMc02593 SMc02594: SMc02594 - hypothetical protein, at 91,222 to 91,890 SMc02594 SMc02595: SMc02595 - cystathionine gamma-synthase, at 91,920 to 93,146 SMc02595 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 89.545 kb on + strand, within SMc02591at 89.716 kb on + strand, within SMc02591at 89.717 kb on - strand, within SMc02591at 89.860 kb on + strandat 89.860 kb on - strandat 89.861 kb on - strandat 89.876 kb on + strandat 89.975 kb on - strand, within SMc02592at 90.033 kb on + strand, within SMc02592at 90.033 kb on + strand, within SMc02592at 90.059 kb on + strand, within SMc02592at 90.059 kb on + strand, within SMc02592at 90.155 kb on + strand, within SMc02592at 90.286 kb on + strand, within SMc02592at 90.287 kb on - strand, within SMc02592at 90.287 kb on - strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.425 kb on - strand, within SMc02592at 90.486 kb on - strandat 90.546 kb on - strandat 90.738 kb on + strand, within SMc02593at 90.739 kb on - strand, within SMc02593at 90.739 kb on - strand, within SMc02593at 91.071 kb on + strandat 91.147 kb on + strandat 91.147 kb on + strandat 91.298 kb on - strand, within SMc02594at 91.367 kb on + strand, within SMc02594at 91.367 kb on + strand, within SMc02594at 91.367 kb on + strand, within SMc02594at 91.367 kb on + strand, within SMc02594at 91.368 kb on - strand, within SMc02594at 91.370 kb on + strand, within SMc02594at 91.371 kb on - strand, within SMc02594at 91.371 kb on - strand, within SMc02594at 91.432 kb on + strand, within SMc02594at 91.471 kb on + strand, within SMc02594at 91.583 kb on - strand, within SMc02594at 91.675 kb on + strand, within SMc02594at 91.676 kb on - strand, within SMc02594at 91.723 kb on + strand, within SMc02594at 91.723 kb on + strand, within SMc02594at 91.724 kb on - strand, within SMc02594at 91.724 kb on - strand, within SMc02594at 91.872 kb on + strandat 91.899 kb on - strandat 91.956 kb on - strandat 91.967 kb on + strandat 91.967 kb on + strandat 91.968 kb on - strandat 92.120 kb on + strand, within SMc02595at 92.120 kb on + strand, within SMc02595at 92.120 kb on + strand, within SMc02595at 92.120 kb on + strand, within SMc02595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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89,545 + SMc02591 0.32 -1.2
89,716 + SMc02591 0.63 -0.7
89,717 - SMc02591 0.64 +0.4
89,860 + -0.2
89,860 - -0.1
89,861 - -1.1
89,876 + -0.6
89,975 - SMc02592 0.11 -0.2
90,033 + SMc02592 0.21 -0.3
90,033 + SMc02592 0.21 -0.4
90,059 + SMc02592 0.25 -1.1
90,059 + SMc02592 0.25 -1.7
90,155 + SMc02592 0.41 -0.7
90,286 + SMc02592 0.63 -0.2
90,287 - SMc02592 0.63 +0.3
90,287 - SMc02592 0.63 +0.3
90,424 + SMc02592 0.87 +0.7
90,424 + SMc02592 0.87 +0.6
90,424 + SMc02592 0.87 -0.9
90,425 - SMc02592 0.87 -0.3
90,486 - -0.5
90,546 - -2.2
90,738 + SMc02593 0.38 -1.8
90,739 - SMc02593 0.38 -0.5
90,739 - SMc02593 0.38 -0.8
91,071 + +1.0
91,147 + -0.1
91,147 + +0.0
91,298 - SMc02594 0.11 +0.2
91,367 + SMc02594 0.22 +4.2
91,367 + SMc02594 0.22 -0.9
91,367 + SMc02594 0.22 +0.6
91,367 + SMc02594 0.22 +0.4
91,368 - SMc02594 0.22 -0.9
91,370 + SMc02594 0.22 -0.6
91,371 - SMc02594 0.22 +0.5
91,371 - SMc02594 0.22 +0.6
91,432 + SMc02594 0.31 -0.6
91,471 + SMc02594 0.37 -1.0
91,583 - SMc02594 0.54 +0.1
91,675 + SMc02594 0.68 -0.3
91,676 - SMc02594 0.68 +0.0
91,723 + SMc02594 0.75 -2.0
91,723 + SMc02594 0.75 -1.2
91,724 - SMc02594 0.75 +0.1
91,724 - SMc02594 0.75 +0.8
91,872 + +0.1
91,899 - +1.2
91,956 - +0.9
91,967 + -0.1
91,967 + -0.0
91,968 - +0.0
92,120 + SMc02595 0.16 +2.2
92,120 + SMc02595 0.16 -0.4
92,120 + SMc02595 0.16 -0.1
92,120 + SMc02595 0.16 +0.4

Or see this region's nucleotide sequence