Strain Fitness in Sinorhizobium meliloti 1021 around SMc02479

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02480 and SMc02479 are separated by 33 nucleotidesSMc02479 and SMc02478 are separated by 182 nucleotides SMc02480: SMc02480 - succinyl-CoA synthetase subunit beta, at 3,317,268 to 3,318,464 SMc02480 SMc02479: SMc02479 - malate dehydrogenase, at 3,318,498 to 3,319,460 SMc02479 SMc02478: SMc02478 - hypothetical protein, at 3,319,643 to 3,320,797 SMc02478 Position (kb) 3318 3319 3320Strain fitness (log2 ratio) -1 0 1at 3317.882 kb on - strand, within SMc02480at 3319.611 kb on - strandat 3319.680 kb on + strandat 3319.680 kb on + strandat 3319.813 kb on - strand, within SMc02478at 3320.174 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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3,317,882 - SMc02480 0.51 -1.1
3,319,611 - +0.8
3,319,680 + -0.3
3,319,680 + -0.7
3,319,813 - SMc02478 0.15 +0.9
3,320,174 + SMc02478 0.46 +1.4
3,320,460 + SMc02478 0.71 +0.4
3,320,460 + SMc02478 0.71 +1.1
3,320,460 + SMc02478 0.71 +0.7
3,320,460 + SMc02478 0.71 +0.3

Or see this region's nucleotide sequence