Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02403 and SMc02404 are separated by 296 nucleotides SMc02404 and SMc02405 overlap by 1 nucleotides
SMc02403: SMc02403 - murein transglycosylase, at 1,153,838 to 1,155,883
SMc02403
SMc02404: SMc02404 - dihydrodipicolinate synthase, at 1,156,180 to 1,157,064
SMc02404
SMc02405: SMc02405 - SsrA-binding protein, at 1,157,064 to 1,157,543
SMc02405
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1155.227 kb on + strand, within SMc02403 at 1155.227 kb on + strand, within SMc02403 at 1155.227 kb on + strand, within SMc02403 at 1155.227 kb on + strand, within SMc02403 at 1155.614 kb on + strand, within SMc02403 at 1155.615 kb on - strand, within SMc02403 at 1155.615 kb on - strand, within SMc02403 at 1155.619 kb on + strand, within SMc02403 at 1155.727 kb on + strand at 1155.728 kb on - strand at 1155.728 kb on - strand at 1155.788 kb on + strand at 1155.927 kb on + strand at 1155.928 kb on - strand at 1155.928 kb on - strand at 1155.928 kb on - strand at 1156.148 kb on + strand at 1157.564 kb on + strand at 1157.564 kb on + strand at 1157.564 kb on + strand at 1157.564 kb on + strand at 1157.564 kb on + strand at 1157.565 kb on - strand at 1157.566 kb on + strand at 1157.566 kb on + strand at 1157.566 kb on + strand at 1157.567 kb on - strand at 1157.567 kb on - strand at 1157.567 kb on - strand at 1157.841 kb on + strand at 1157.841 kb on + strand at 1157.993 kb on + strand at 1157.993 kb on + strand at 1157.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,155,227 + SMc02403 0.68 -1.2 1,155,227 + SMc02403 0.68 -1.3 1,155,227 + SMc02403 0.68 -0.2 1,155,227 + SMc02403 0.68 -0.0 1,155,614 + SMc02403 0.87 -0.9 1,155,615 - SMc02403 0.87 +0.2 1,155,615 - SMc02403 0.87 +0.1 1,155,619 + SMc02403 0.87 -1.3 1,155,727 + -0.5 1,155,728 - -2.5 1,155,728 - +0.3 1,155,788 + -2.7 1,155,927 + -0.6 1,155,928 - +0.3 1,155,928 - +1.1 1,155,928 - -0.7 1,156,148 + +2.0 1,157,564 + -0.5 1,157,564 + -0.6 1,157,564 + -0.9 1,157,564 + +0.1 1,157,564 + -1.4 1,157,565 - -0.5 1,157,566 + +0.0 1,157,566 + +0.5 1,157,566 + -1.2 1,157,567 - -0.0 1,157,567 - -0.9 1,157,567 - +3.5 1,157,841 + -0.2 1,157,841 + +2.1 1,157,993 + -0.8 1,157,993 + -0.1 1,157,993 + +0.1
Or see this region's nucleotide sequence