Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02303 and SMc02208 are separated by 252 nucleotides SMc02208 and SMc02304 are separated by 261 nucleotides SMc02304 and SMc02305 are separated by 170 nucleotides SMc02305 and SMc02306 are separated by 154 nucleotides SMc02306 and SMc02307 are separated by 64 nucleotides
SMc02303: SMc02303 - partial transposase for insertion sequence element ISRM1, at 676,784 to 676,966
SMc02303
SMc02208: SMc02208 - tRNA-Thr, at 677,219 to 677,293
SMc02208
SMc02304: SMc02304 - hypothetical protein, at 677,555 to 677,770
SMc02304
SMc02305: SMc02305 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 677,941 to 679,233
SMc02305
SMc02306: SMc02306 - hypothetical protein, at 679,388 to 679,828
SMc02306
SMc02307: SMc02307 - histidinol dehydrogenase, at 679,893 to 681,197
SMc02307
Position (kb) 677
678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 677.000 kb on + strand at 677.000 kb on + strand at 677.000 kb on + strand at 677.001 kb on - strand at 677.042 kb on + strand at 677.085 kb on - strand at 677.085 kb on - strand at 677.085 kb on - strand at 677.145 kb on - strand at 677.581 kb on + strand, within SMc02304 at 677.581 kb on + strand, within SMc02304 at 677.582 kb on - strand, within SMc02304 at 677.582 kb on - strand, within SMc02304 at 677.768 kb on + strand at 677.769 kb on - strand at 677.864 kb on + strand at 679.273 kb on + strand at 679.274 kb on - strand at 679.329 kb on + strand at 679.329 kb on + strand at 679.329 kb on + strand at 679.330 kb on - strand at 679.484 kb on + strand, within SMc02306 at 680.047 kb on - strand, within SMc02307 at 680.062 kb on + strand, within SMc02307 at 680.075 kb on + strand, within SMc02307 at 680.143 kb on + strand, within SMc02307 at 680.217 kb on + strand, within SMc02307 at 680.218 kb on - strand, within SMc02307 at 680.218 kb on - strand, within SMc02307
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 677,000 + +2.3 677,000 + -1.1 677,000 + +0.3 677,001 - +0.3 677,042 + -0.1 677,085 - +0.0 677,085 - +0.9 677,085 - +0.3 677,145 - -0.8 677,581 + SMc02304 0.12 +0.5 677,581 + SMc02304 0.12 -0.1 677,582 - SMc02304 0.12 -0.6 677,582 - SMc02304 0.12 -0.8 677,768 + +0.1 677,769 - -0.3 677,864 + +0.6 679,273 + -0.7 679,274 - -0.4 679,329 + +0.2 679,329 + +0.0 679,329 + -0.2 679,330 - -1.1 679,484 + SMc02306 0.22 -0.0 680,047 - SMc02307 0.12 -0.8 680,062 + SMc02307 0.13 -1.8 680,075 + SMc02307 0.14 -0.7 680,143 + SMc02307 0.19 -1.9 680,217 + SMc02307 0.25 -0.3 680,218 - SMc02307 0.25 +2.3 680,218 - SMc02307 0.25 -3.3
Or see this region's nucleotide sequence