Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02275 and SMc02276 are separated by 116 nucleotides SMc02276 and SMc02277 are separated by 135 nucleotides SMc02277 and SMc02278 are separated by 46 nucleotides SMc02278 and SMc02279 are separated by 330 nucleotides
SMc02275: SMc02275 - pyrazinamidase/nicotinamidase (Includes: pyrazinamidase, nicotinamidase) protein, at 649,987 to 650,622
SMc02275
SMc02276: SMc02276 - nicotinate phosphoribosyltransferase, at 650,739 to 652,043
SMc02276
SMc02277: SMc02277 - hypothetical protein, at 652,179 to 652,391
SMc02277
SMc02278: SMc02278 - hypothetical protein, at 652,438 to 652,590
SMc02278
SMc02279: SMc02279 - signal peptide protein, at 652,921 to 653,298
SMc02279
Position (kb) 650
651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2 at 649.778 kb on - strand at 649.779 kb on + strand at 649.780 kb on - strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.846 kb on - strand at 649.911 kb on + strand at 649.916 kb on + strand at 649.916 kb on + strand at 649.917 kb on - strand at 649.919 kb on + strand at 649.942 kb on + strand at 649.942 kb on + strand at 650.052 kb on + strand, within SMc02275 at 650.339 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.674 kb on + strand at 650.733 kb on + strand at 650.733 kb on + strand at 650.733 kb on + strand at 650.733 kb on + strand at 650.734 kb on - strand at 650.734 kb on - strand at 650.752 kb on - strand at 650.769 kb on + strand at 650.769 kb on + strand at 650.769 kb on + strand at 650.769 kb on + strand at 650.770 kb on - strand at 650.770 kb on - strand at 650.770 kb on - strand at 650.770 kb on - strand at 650.770 kb on - strand at 650.778 kb on - strand at 650.778 kb on - strand at 650.778 kb on - strand at 650.826 kb on + strand at 650.827 kb on - strand at 650.999 kb on - strand, within SMc02276 at 650.999 kb on - strand, within SMc02276 at 650.999 kb on - strand, within SMc02276 at 651.021 kb on + strand, within SMc02276 at 651.022 kb on - strand, within SMc02276 at 651.244 kb on - strand, within SMc02276 at 651.346 kb on + strand, within SMc02276 at 651.525 kb on + strand, within SMc02276 at 651.526 kb on - strand, within SMc02276 at 651.783 kb on + strand, within SMc02276 at 651.784 kb on - strand, within SMc02276 at 651.898 kb on + strand, within SMc02276 at 651.899 kb on - strand, within SMc02276 at 651.990 kb on + strand at 651.991 kb on - strand at 652.097 kb on - strand at 652.097 kb on - strand at 652.160 kb on + strand at 652.161 kb on - strand at 652.192 kb on - strand at 652.396 kb on + strand at 652.584 kb on + strand at 652.638 kb on - strand at 652.643 kb on + strand at 652.644 kb on - strand at 652.644 kb on - strand at 652.644 kb on - strand at 652.687 kb on + strand at 652.790 kb on - strand at 652.790 kb on - strand at 652.797 kb on - strand at 652.910 kb on - strand at 652.996 kb on + strand, within SMc02279 at 652.997 kb on - strand, within SMc02279 at 652.997 kb on - strand, within SMc02279
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 649,778 - +0.7 649,779 + -0.2 649,780 - +1.0 649,845 + +0.0 649,845 + -0.0 649,845 + -1.8 649,845 + +0.2 649,846 - +0.5 649,911 + -0.3 649,916 + -1.9 649,916 + +0.6 649,917 - -2.3 649,919 + -0.2 649,942 + -0.3 649,942 + -0.1 650,052 + SMc02275 0.10 +0.3 650,339 + SMc02275 0.55 -0.2 650,441 + SMc02275 0.71 -0.3 650,441 + SMc02275 0.71 -1.9 650,441 + SMc02275 0.71 +1.8 650,441 + SMc02275 0.71 -0.1 650,620 + -0.3 650,620 + -0.1 650,620 + -1.1 650,674 + -0.4 650,733 + +0.8 650,733 + -0.7 650,733 + +1.8 650,733 + -1.5 650,734 - +0.2 650,734 - -0.7 650,752 - -0.9 650,769 + -1.2 650,769 + -0.7 650,769 + +0.9 650,769 + +0.4 650,770 - -1.4 650,770 - -0.8 650,770 - -1.0 650,770 - -0.2 650,770 - -0.6 650,778 - -0.2 650,778 - -2.7 650,778 - -0.6 650,826 + -1.1 650,827 - -0.3 650,999 - SMc02276 0.20 +0.6 650,999 - SMc02276 0.20 +1.2 650,999 - SMc02276 0.20 +0.3 651,021 + SMc02276 0.22 -0.7 651,022 - SMc02276 0.22 +0.7 651,244 - SMc02276 0.39 +1.0 651,346 + SMc02276 0.47 +0.3 651,525 + SMc02276 0.60 -0.3 651,526 - SMc02276 0.60 -0.3 651,783 + SMc02276 0.80 -1.5 651,784 - SMc02276 0.80 +0.2 651,898 + SMc02276 0.89 -1.9 651,899 - SMc02276 0.89 -0.3 651,990 + +1.3 651,991 - -1.1 652,097 - +1.3 652,097 - +0.1 652,160 + -0.3 652,161 - -0.4 652,192 - -1.8 652,396 + -1.0 652,584 + -2.6 652,638 - -0.6 652,643 + -1.3 652,644 - -0.7 652,644 - -0.8 652,644 - +0.0 652,687 + -0.8 652,790 - +0.3 652,790 - -0.5 652,797 - -0.6 652,910 - -1.3 652,996 + SMc02279 0.20 +0.9 652,997 - SMc02279 0.20 -0.1 652,997 - SMc02279 0.20 +0.0
Or see this region's nucleotide sequence