Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02272 and SMc02273 overlap by 4 nucleotides SMc02273 and SMc02274 are separated by 367 nucleotides
SMc02272: SMc02272 - acyl-transferase transferase, at 639,160 to 640,575
SMc02272
SMc02273: SMc02273 - fatty acid synthase transmembrane protein, at 640,572 to 648,086
SMc02273
SMc02274: SMc02274 - capsule polysaccharide exporter protein, at 648,454 to 649,677
SMc02274
Position (kb) 640
641
642
643
644
645
646
647
648
649 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 639.596 kb on + strand, within SMc02272 at 639.597 kb on - strand, within SMc02272 at 639.652 kb on + strand, within SMc02272 at 639.652 kb on + strand, within SMc02272 at 639.652 kb on + strand, within SMc02272 at 639.653 kb on - strand, within SMc02272 at 639.656 kb on + strand, within SMc02272 at 639.657 kb on - strand, within SMc02272 at 639.863 kb on + strand, within SMc02272 at 639.896 kb on + strand, within SMc02272 at 640.076 kb on + strand, within SMc02272 at 640.113 kb on - strand, within SMc02272 at 640.257 kb on - strand, within SMc02272 at 640.257 kb on - strand, within SMc02272 at 640.262 kb on + strand, within SMc02272 at 640.392 kb on + strand, within SMc02272 at 640.392 kb on + strand, within SMc02272 at 640.393 kb on - strand, within SMc02272 at 640.393 kb on - strand, within SMc02272 at 640.393 kb on - strand, within SMc02272 at 640.686 kb on + strand at 640.687 kb on - strand at 640.727 kb on + strand at 640.728 kb on - strand at 640.830 kb on + strand at 640.831 kb on - strand at 640.851 kb on - strand at 641.297 kb on - strand at 641.314 kb on + strand at 641.315 kb on - strand at 641.315 kb on - strand at 641.675 kb on + strand, within SMc02273 at 641.675 kb on + strand, within SMc02273 at 641.843 kb on + strand, within SMc02273 at 641.844 kb on - strand, within SMc02273 at 641.844 kb on - strand, within SMc02273 at 641.891 kb on - strand, within SMc02273 at 642.017 kb on - strand, within SMc02273 at 642.064 kb on + strand, within SMc02273 at 642.065 kb on - strand, within SMc02273 at 642.068 kb on - strand, within SMc02273 at 642.406 kb on + strand, within SMc02273 at 642.406 kb on + strand, within SMc02273 at 642.406 kb on + strand, within SMc02273 at 642.407 kb on - strand, within SMc02273 at 642.407 kb on - strand, within SMc02273 at 642.409 kb on + strand, within SMc02273 at 642.409 kb on + strand, within SMc02273 at 642.410 kb on - strand, within SMc02273 at 642.410 kb on - strand, within SMc02273 at 642.410 kb on - strand, within SMc02273 at 642.417 kb on - strand, within SMc02273 at 642.944 kb on + strand, within SMc02273 at 642.944 kb on + strand, within SMc02273 at 642.944 kb on + strand, within SMc02273 at 642.944 kb on + strand, within SMc02273 at 642.945 kb on - strand, within SMc02273 at 642.945 kb on - strand, within SMc02273 at 642.999 kb on - strand, within SMc02273 at 643.006 kb on + strand, within SMc02273 at 643.006 kb on + strand, within SMc02273 at 643.006 kb on + strand, within SMc02273 at 643.074 kb on + strand, within SMc02273 at 643.185 kb on + strand, within SMc02273 at 643.186 kb on - strand, within SMc02273 at 643.186 kb on - strand, within SMc02273 at 643.186 kb on - strand, within SMc02273 at 643.396 kb on + strand, within SMc02273 at 643.396 kb on + strand, within SMc02273 at 643.396 kb on + strand, within SMc02273 at 643.397 kb on - strand, within SMc02273 at 643.397 kb on - strand, within SMc02273 at 643.397 kb on - strand, within SMc02273 at 643.397 kb on - strand, within SMc02273 at 643.549 kb on - strand, within SMc02273 at 643.729 kb on + strand, within SMc02273 at 643.730 kb on - strand, within SMc02273 at 643.998 kb on - strand, within SMc02273 at 643.998 kb on - strand, within SMc02273 at 643.998 kb on - strand, within SMc02273 at 644.206 kb on + strand, within SMc02273 at 644.206 kb on + strand, within SMc02273 at 644.207 kb on - strand, within SMc02273 at 644.207 kb on - strand, within SMc02273 at 644.548 kb on + strand, within SMc02273 at 644.549 kb on - strand, within SMc02273 at 644.590 kb on + strand, within SMc02273 at 644.590 kb on + strand, within SMc02273 at 644.591 kb on - strand, within SMc02273 at 644.591 kb on - strand, within SMc02273 at 644.591 kb on - strand, within SMc02273 at 644.591 kb on - strand, within SMc02273 at 644.594 kb on + strand, within SMc02273 at 644.594 kb on + strand, within SMc02273 at 644.595 kb on - strand, within SMc02273 at 644.595 kb on - strand, within SMc02273 at 644.762 kb on + strand, within SMc02273 at 644.763 kb on - strand, within SMc02273 at 644.763 kb on - strand, within SMc02273 at 644.763 kb on - strand, within SMc02273 at 644.763 kb on - strand, within SMc02273 at 644.764 kb on + strand, within SMc02273 at 644.764 kb on + strand, within SMc02273 at 644.764 kb on + strand, within SMc02273 at 644.765 kb on - strand, within SMc02273 at 644.765 kb on - strand, within SMc02273 at 644.765 kb on - strand, within SMc02273 at 644.854 kb on + strand, within SMc02273 at 644.854 kb on + strand, within SMc02273 at 644.959 kb on + strand, within SMc02273 at 644.959 kb on + strand, within SMc02273 at 644.989 kb on + strand, within SMc02273 at 644.990 kb on - strand, within SMc02273 at 645.253 kb on + strand, within SMc02273 at 645.253 kb on + strand, within SMc02273 at 645.253 kb on + strand, within SMc02273 at 645.253 kb on + strand, within SMc02273 at 645.254 kb on - strand, within SMc02273 at 645.254 kb on - strand, within SMc02273 at 645.676 kb on + strand, within SMc02273 at 645.676 kb on + strand, within SMc02273 at 645.790 kb on + strand, within SMc02273 at 645.791 kb on - strand, within SMc02273 at 645.844 kb on + strand, within SMc02273 at 646.112 kb on + strand, within SMc02273 at 646.214 kb on - strand, within SMc02273 at 646.335 kb on - strand, within SMc02273 at 646.335 kb on - strand, within SMc02273 at 646.641 kb on - strand, within SMc02273 at 646.641 kb on - strand, within SMc02273 at 646.716 kb on - strand, within SMc02273 at 646.716 kb on - strand, within SMc02273 at 646.717 kb on + strand, within SMc02273 at 646.717 kb on + strand, within SMc02273 at 646.717 kb on + strand, within SMc02273 at 646.718 kb on - strand, within SMc02273 at 646.718 kb on - strand, within SMc02273 at 646.718 kb on - strand, within SMc02273 at 646.718 kb on - strand, within SMc02273 at 646.718 kb on - strand, within SMc02273 at 646.718 kb on - strand, within SMc02273 at 646.718 kb on - strand, within SMc02273 at 646.994 kb on - strand, within SMc02273 at 647.124 kb on + strand, within SMc02273 at 647.133 kb on + strand, within SMc02273 at 647.133 kb on + strand, within SMc02273 at 647.133 kb on + strand, within SMc02273 at 647.133 kb on + strand, within SMc02273 at 647.133 kb on + strand, within SMc02273 at 647.134 kb on - strand, within SMc02273 at 647.134 kb on - strand, within SMc02273 at 647.134 kb on - strand, within SMc02273 at 647.134 kb on - strand, within SMc02273 at 647.165 kb on + strand, within SMc02273 at 647.165 kb on + strand, within SMc02273 at 647.178 kb on + strand, within SMc02273 at 647.179 kb on - strand, within SMc02273 at 647.179 kb on - strand, within SMc02273 at 647.219 kb on - strand, within SMc02273 at 647.219 kb on - strand, within SMc02273 at 647.219 kb on - strand, within SMc02273 at 647.219 kb on - strand, within SMc02273 at 647.318 kb on - strand, within SMc02273 at 647.392 kb on + strand at 647.393 kb on - strand at 647.413 kb on + strand at 647.490 kb on - strand at 647.628 kb on - strand at 647.668 kb on + strand at 647.668 kb on + strand at 647.669 kb on - strand at 647.734 kb on + strand at 647.735 kb on - strand at 647.735 kb on - strand at 647.834 kb on + strand at 647.835 kb on - strand at 647.835 kb on - strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.884 kb on + strand at 647.884 kb on + strand at 647.884 kb on + strand at 647.884 kb on + strand at 647.889 kb on - strand at 647.889 kb on - strand at 647.917 kb on + strand at 647.918 kb on - strand at 648.069 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.089 kb on - strand at 648.194 kb on - strand at 648.208 kb on - strand at 648.210 kb on + strand at 648.210 kb on + strand at 648.222 kb on - strand at 648.222 kb on - strand at 648.228 kb on + strand at 648.228 kb on + strand at 648.229 kb on - strand at 648.256 kb on + strand at 648.260 kb on + strand at 648.260 kb on + strand at 648.262 kb on + strand at 648.262 kb on + strand at 648.262 kb on + strand at 648.263 kb on - strand at 648.263 kb on - strand at 648.263 kb on - strand at 648.285 kb on + strand at 648.285 kb on + strand at 648.285 kb on + strand at 648.286 kb on - strand at 648.286 kb on - strand at 648.306 kb on + strand at 648.313 kb on + strand at 648.350 kb on + strand at 648.447 kb on + strand at 648.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 639,596 + SMc02272 0.31 +3.0 639,597 - SMc02272 0.31 +1.3 639,652 + SMc02272 0.35 +1.0 639,652 + SMc02272 0.35 +0.7 639,652 + SMc02272 0.35 +1.6 639,653 - SMc02272 0.35 +0.4 639,656 + SMc02272 0.35 -0.1 639,657 - SMc02272 0.35 +0.4 639,863 + SMc02272 0.50 +0.8 639,896 + SMc02272 0.52 +0.7 640,076 + SMc02272 0.65 -0.2 640,113 - SMc02272 0.67 +0.8 640,257 - SMc02272 0.77 +1.0 640,257 - SMc02272 0.77 +0.3 640,262 + SMc02272 0.78 +0.6 640,392 + SMc02272 0.87 +0.9 640,392 + SMc02272 0.87 -0.2 640,393 - SMc02272 0.87 +0.5 640,393 - SMc02272 0.87 +0.9 640,393 - SMc02272 0.87 +1.1 640,686 + +0.8 640,687 - +2.8 640,727 + +0.6 640,728 - +0.0 640,830 + +0.6 640,831 - -0.0 640,851 - +3.1 641,297 - -0.5 641,314 + +0.8 641,315 - +1.8 641,315 - +1.1 641,675 + SMc02273 0.15 +0.7 641,675 + SMc02273 0.15 +0.3 641,843 + SMc02273 0.17 +1.3 641,844 - SMc02273 0.17 +0.5 641,844 - SMc02273 0.17 +1.3 641,891 - SMc02273 0.18 +0.7 642,017 - SMc02273 0.19 +0.4 642,064 + SMc02273 0.20 +1.6 642,065 - SMc02273 0.20 +0.9 642,068 - SMc02273 0.20 +2.2 642,406 + SMc02273 0.24 +0.8 642,406 + SMc02273 0.24 +1.0 642,406 + SMc02273 0.24 +1.7 642,407 - SMc02273 0.24 -0.7 642,407 - SMc02273 0.24 -0.3 642,409 + SMc02273 0.24 +0.6 642,409 + SMc02273 0.24 +1.0 642,410 - SMc02273 0.24 +0.6 642,410 - SMc02273 0.24 +0.9 642,410 - SMc02273 0.24 +0.6 642,417 - SMc02273 0.25 +0.0 642,944 + SMc02273 0.32 +1.6 642,944 + SMc02273 0.32 +1.0 642,944 + SMc02273 0.32 +2.5 642,944 + SMc02273 0.32 +0.2 642,945 - SMc02273 0.32 +2.0 642,945 - SMc02273 0.32 +0.5 642,999 - SMc02273 0.32 +0.6 643,006 + SMc02273 0.32 +0.4 643,006 + SMc02273 0.32 +1.2 643,006 + SMc02273 0.32 +0.7 643,074 + SMc02273 0.33 +0.5 643,185 + SMc02273 0.35 +1.4 643,186 - SMc02273 0.35 +0.6 643,186 - SMc02273 0.35 +1.1 643,186 - SMc02273 0.35 +1.1 643,396 + SMc02273 0.38 -0.7 643,396 + SMc02273 0.38 +0.3 643,396 + SMc02273 0.38 +2.1 643,397 - SMc02273 0.38 +1.0 643,397 - SMc02273 0.38 +1.1 643,397 - SMc02273 0.38 +1.2 643,397 - SMc02273 0.38 +0.8 643,549 - SMc02273 0.40 +0.6 643,729 + SMc02273 0.42 +0.6 643,730 - SMc02273 0.42 +0.7 643,998 - SMc02273 0.46 -1.0 643,998 - SMc02273 0.46 -1.0 643,998 - SMc02273 0.46 -1.1 644,206 + SMc02273 0.48 +0.2 644,206 + SMc02273 0.48 +0.7 644,207 - SMc02273 0.48 +1.3 644,207 - SMc02273 0.48 +0.5 644,548 + SMc02273 0.53 +0.9 644,549 - SMc02273 0.53 +1.3 644,590 + SMc02273 0.53 +1.6 644,590 + SMc02273 0.53 +0.4 644,591 - SMc02273 0.53 +1.0 644,591 - SMc02273 0.53 +1.2 644,591 - SMc02273 0.53 +0.3 644,591 - SMc02273 0.53 +0.0 644,594 + SMc02273 0.54 +0.4 644,594 + SMc02273 0.54 +0.9 644,595 - SMc02273 0.54 +1.4 644,595 - SMc02273 0.54 +1.7 644,762 + SMc02273 0.56 -0.1 644,763 - SMc02273 0.56 -0.3 644,763 - SMc02273 0.56 +0.6 644,763 - SMc02273 0.56 -1.3 644,763 - SMc02273 0.56 +1.1 644,764 + SMc02273 0.56 +0.7 644,764 + SMc02273 0.56 +0.4 644,764 + SMc02273 0.56 +0.3 644,765 - SMc02273 0.56 -0.1 644,765 - SMc02273 0.56 +0.5 644,765 - SMc02273 0.56 +0.5 644,854 + SMc02273 0.57 +1.3 644,854 + SMc02273 0.57 +0.1 644,959 + SMc02273 0.58 +0.4 644,959 + SMc02273 0.58 +1.1 644,989 + SMc02273 0.59 +0.9 644,990 - SMc02273 0.59 +1.0 645,253 + SMc02273 0.62 -1.5 645,253 + SMc02273 0.62 +0.3 645,253 + SMc02273 0.62 +1.5 645,253 + SMc02273 0.62 +1.0 645,254 - SMc02273 0.62 +0.6 645,254 - SMc02273 0.62 -0.3 645,676 + SMc02273 0.68 +0.9 645,676 + SMc02273 0.68 +0.4 645,790 + SMc02273 0.69 -0.1 645,791 - SMc02273 0.69 +1.1 645,844 + SMc02273 0.70 +3.1 646,112 + SMc02273 0.74 +0.5 646,214 - SMc02273 0.75 +0.3 646,335 - SMc02273 0.77 -0.0 646,335 - SMc02273 0.77 -0.9 646,641 - SMc02273 0.81 +0.5 646,641 - SMc02273 0.81 +0.1 646,716 - SMc02273 0.82 +0.1 646,716 - SMc02273 0.82 -0.2 646,717 + SMc02273 0.82 +2.9 646,717 + SMc02273 0.82 +1.6 646,717 + SMc02273 0.82 +0.7 646,718 - SMc02273 0.82 -1.0 646,718 - SMc02273 0.82 -0.9 646,718 - SMc02273 0.82 -0.1 646,718 - SMc02273 0.82 -0.2 646,718 - SMc02273 0.82 +1.3 646,718 - SMc02273 0.82 +0.7 646,718 - SMc02273 0.82 -0.2 646,994 - SMc02273 0.85 -1.7 647,124 + SMc02273 0.87 -0.0 647,133 + SMc02273 0.87 +0.1 647,133 + SMc02273 0.87 +0.7 647,133 + SMc02273 0.87 +1.2 647,133 + SMc02273 0.87 +1.2 647,133 + SMc02273 0.87 -0.4 647,134 - SMc02273 0.87 +1.0 647,134 - SMc02273 0.87 +0.4 647,134 - SMc02273 0.87 +0.5 647,134 - SMc02273 0.87 +0.4 647,165 + SMc02273 0.88 +0.2 647,165 + SMc02273 0.88 +0.7 647,178 + SMc02273 0.88 +0.7 647,179 - SMc02273 0.88 +0.4 647,179 - SMc02273 0.88 +0.4 647,219 - SMc02273 0.88 -0.1 647,219 - SMc02273 0.88 +0.0 647,219 - SMc02273 0.88 -1.1 647,219 - SMc02273 0.88 +0.5 647,318 - SMc02273 0.90 -0.1 647,392 + +0.6 647,393 - +0.0 647,413 + +0.3 647,490 - +0.7 647,628 - +1.0 647,668 + +0.0 647,668 + +0.9 647,669 - -2.2 647,734 + -0.5 647,735 - -0.2 647,735 - +0.5 647,834 + -1.0 647,835 - +0.6 647,835 - +0.3 647,836 + +0.3 647,836 + +1.4 647,836 + -0.4 647,836 + -0.4 647,836 + +0.7 647,836 + -0.6 647,836 + -0.1 647,836 + +0.4 647,836 + +0.2 647,837 - +0.1 647,837 - +0.2 647,837 - +0.0 647,837 - -0.7 647,837 - +0.4 647,837 - +0.4 647,837 - +0.4 647,837 - +0.6 647,837 - -0.3 647,837 - +1.6 647,837 - +0.5 647,837 - +2.5 647,837 - +0.3 647,884 + +1.0 647,884 + +1.6 647,884 + +0.3 647,884 + +0.3 647,889 - +0.6 647,889 - +0.0 647,917 + +0.2 647,918 - +0.7 648,069 + +1.4 648,088 + +0.0 648,088 + +0.6 648,088 + -0.0 648,088 + +0.4 648,088 + +0.1 648,088 + +0.5 648,089 - -0.4 648,194 - -0.7 648,208 - +0.3 648,210 + -0.9 648,210 + +0.2 648,222 - +0.7 648,222 - +0.3 648,228 + -2.5 648,228 + +0.2 648,229 - -0.1 648,256 + -0.0 648,260 + +0.4 648,260 + +0.0 648,262 + +0.1 648,262 + +1.3 648,262 + +0.6 648,263 - -0.3 648,263 - -0.9 648,263 - -1.5 648,285 + +1.9 648,285 + -0.4 648,285 + -1.2 648,286 - -0.5 648,286 - +0.3 648,306 + -0.5 648,313 + -0.4 648,350 + -0.2 648,447 + +0.0 648,453 + +0.0
Or see this region's nucleotide sequence