Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02262 and SMc02263 overlap by 4 nucleotides SMc02263 and SMc02264 are separated by 189 nucleotides SMc02264 and SMc02265 are separated by 93 nucleotides
SMc02262: SMc02262 - aminotransferase, at 626,634 to 627,824
SMc02262
SMc02263: SMc02263 - hypothetical protein, at 627,821 to 629,434
SMc02263
SMc02264: SMc02264 - hypothetical protein, at 629,624 to 630,016
SMc02264
SMc02265: SMc02265 - preprotein translocase subunit SecD/SecF, at 630,110 to 632,644
SMc02265
Position (kb) 627
628
629
630 Strain fitness (log2 ratio) -2
-1
0
1 at 626.829 kb on + strand, within SMc02262 at 626.871 kb on + strand, within SMc02262 at 627.005 kb on - strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.015 kb on + strand, within SMc02262 at 627.016 kb on - strand, within SMc02262 at 627.147 kb on - strand, within SMc02262 at 627.147 kb on - strand, within SMc02262 at 627.247 kb on + strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.248 kb on - strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.249 kb on + strand, within SMc02262 at 627.250 kb on - strand, within SMc02262 at 627.469 kb on - strand, within SMc02262 at 627.594 kb on - strand, within SMc02262 at 627.913 kb on + strand at 627.914 kb on - strand at 627.914 kb on - strand at 627.914 kb on - strand at 628.061 kb on - strand, within SMc02263 at 628.670 kb on + strand, within SMc02263 at 628.991 kb on + strand, within SMc02263 at 629.055 kb on - strand, within SMc02263 at 629.055 kb on - strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.109 kb on + strand, within SMc02263 at 629.110 kb on - strand, within SMc02263 at 629.110 kb on - strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.231 kb on + strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.232 kb on - strand, within SMc02263 at 629.307 kb on - strand at 629.307 kb on - strand at 629.755 kb on + strand, within SMc02264
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 626,829 + SMc02262 0.16 +0.5 626,871 + SMc02262 0.20 +0.1 627,005 - SMc02262 0.31 +0.2 627,015 + SMc02262 0.32 -0.2 627,015 + SMc02262 0.32 -0.9 627,015 + SMc02262 0.32 -0.1 627,016 - SMc02262 0.32 -1.5 627,147 - SMc02262 0.43 -1.2 627,147 - SMc02262 0.43 -0.8 627,247 + SMc02262 0.51 +0.0 627,248 - SMc02262 0.52 +0.2 627,248 - SMc02262 0.52 -0.4 627,248 - SMc02262 0.52 +0.4 627,248 - SMc02262 0.52 -1.0 627,248 - SMc02262 0.52 -0.6 627,249 + SMc02262 0.52 +0.4 627,249 + SMc02262 0.52 -0.4 627,249 + SMc02262 0.52 -2.3 627,249 + SMc02262 0.52 +0.8 627,249 + SMc02262 0.52 +0.1 627,249 + SMc02262 0.52 +0.1 627,250 - SMc02262 0.52 +0.1 627,469 - SMc02262 0.70 +0.1 627,594 - SMc02262 0.81 +0.2 627,913 + +1.1 627,914 - -0.3 627,914 - +0.4 627,914 - +1.0 628,061 - SMc02263 0.15 +0.0 628,670 + SMc02263 0.53 -0.6 628,991 + SMc02263 0.72 +1.2 629,055 - SMc02263 0.76 +0.4 629,055 - SMc02263 0.76 -2.1 629,109 + SMc02263 0.80 -0.4 629,109 + SMc02263 0.80 -1.0 629,109 + SMc02263 0.80 -0.9 629,110 - SMc02263 0.80 -0.0 629,110 - SMc02263 0.80 +1.3 629,231 + SMc02263 0.87 +0.1 629,231 + SMc02263 0.87 -0.3 629,231 + SMc02263 0.87 +0.7 629,231 + SMc02263 0.87 -0.5 629,232 - SMc02263 0.87 -0.3 629,232 - SMc02263 0.87 -0.1 629,232 - SMc02263 0.87 +0.5 629,232 - SMc02263 0.87 -1.6 629,307 - +0.3 629,307 - -2.4 629,755 + SMc02264 0.33 -2.0
Or see this region's nucleotide sequence