Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02231 and SMc02232 are separated by 337 nucleotides SMc02232 and SMc02234 overlap by 1 nucleotides SMc02234 and SMc02235 are separated by 98 nucleotides
SMc02231: SMc02231 - hypothetical protein, at 596,668 to 597,357
SMc02231
SMc02232: SMc02232 - hypothetical protein, at 597,695 to 598,621
SMc02232
SMc02234: SMc02234 - hypothetical protein, at 598,621 to 599,424
SMc02234
SMc02235: SMc02235 - transcriptional regulator, at 599,523 to 599,759
SMc02235
Position (kb) 597
598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 596.702 kb on - strand at 596.702 kb on - strand at 596.702 kb on - strand at 596.752 kb on + strand, within SMc02231 at 596.752 kb on + strand, within SMc02231 at 596.753 kb on - strand, within SMc02231 at 596.753 kb on - strand, within SMc02231 at 597.211 kb on - strand, within SMc02231 at 597.515 kb on + strand at 597.515 kb on + strand at 597.515 kb on + strand at 597.515 kb on + strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.541 kb on + strand at 597.542 kb on - strand at 597.705 kb on - strand at 597.831 kb on - strand, within SMc02232 at 597.932 kb on - strand, within SMc02232 at 598.047 kb on - strand, within SMc02232 at 598.054 kb on - strand, within SMc02232 at 598.311 kb on - strand, within SMc02232 at 598.589 kb on + strand at 598.599 kb on + strand at 598.848 kb on + strand, within SMc02234 at 598.927 kb on - strand, within SMc02234 at 599.138 kb on - strand, within SMc02234 at 599.243 kb on - strand, within SMc02234 at 599.323 kb on - strand, within SMc02234 at 599.354 kb on - strand at 599.568 kb on + strand, within SMc02235 at 599.568 kb on + strand, within SMc02235 at 599.568 kb on + strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.616 kb on + strand, within SMc02235 at 599.617 kb on - strand, within SMc02235 at 599.617 kb on - strand, within SMc02235
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 596,702 - +1.3 596,702 - -0.7 596,702 - -1.1 596,752 + SMc02231 0.12 +1.2 596,752 + SMc02231 0.12 -0.6 596,753 - SMc02231 0.12 -0.2 596,753 - SMc02231 0.12 +0.8 597,211 - SMc02231 0.79 -0.3 597,515 + +0.0 597,515 + -0.1 597,515 + -0.7 597,515 + +0.7 597,516 - +0.6 597,516 - +0.0 597,516 - -0.6 597,516 - +0.2 597,516 - +0.3 597,516 - -0.4 597,516 - -1.9 597,516 - -0.8 597,516 - -0.3 597,541 + +2.1 597,542 - -2.0 597,705 - -0.4 597,831 - SMc02232 0.15 -2.3 597,932 - SMc02232 0.26 -2.2 598,047 - SMc02232 0.38 -1.8 598,054 - SMc02232 0.39 -0.3 598,311 - SMc02232 0.66 -1.0 598,589 + -1.8 598,599 + +0.3 598,848 + SMc02234 0.28 +0.0 598,927 - SMc02234 0.38 -2.9 599,138 - SMc02234 0.64 -0.8 599,243 - SMc02234 0.77 -1.8 599,323 - SMc02234 0.87 -1.4 599,354 - -1.8 599,568 + SMc02235 0.19 -1.5 599,568 + SMc02235 0.19 -0.5 599,568 + SMc02235 0.19 +0.6 599,569 - SMc02235 0.19 +0.1 599,569 - SMc02235 0.19 +1.0 599,569 - SMc02235 0.19 -1.8 599,616 + SMc02235 0.39 -1.2 599,617 - SMc02235 0.40 -1.4 599,617 - SMc02235 0.40 +0.9
Or see this region's nucleotide sequence