Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01702 and SMc01701 are separated by 88 nucleotides SMc01701 and SMc02181 are separated by 249 nucleotides SMc02181 and SMc02180 are separated by 186 nucleotides SMc02180 and SMc02179 are separated by 58 nucleotides
SMc01702: SMc01702 - oxidoreductase, at 509,911 to 510,897
SMc01702
SMc01701: SMc01701 - hypothetical protein, at 510,986 to 511,570
SMc01701
SMc02181: SMc02181 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 511,820 to 515,521
SMc02181
SMc02180: SMc02180 - hypothetical protein, at 515,708 to 516,022
SMc02180
SMc02179: SMc02179 - hypothetical protein, at 516,081 to 516,887
SMc02179
Position (kb) 511
512
513
514
515
516 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 510.904 kb on + strand at 510.904 kb on + strand at 510.905 kb on - strand at 510.905 kb on - strand at 510.950 kb on + strand at 510.962 kb on + strand at 510.963 kb on - strand at 511.401 kb on + strand, within SMc01701 at 511.402 kb on - strand, within SMc01701 at 511.613 kb on + strand at 511.767 kb on - strand at 511.767 kb on - strand at 511.767 kb on - strand at 511.984 kb on + strand at 512.184 kb on + strand at 512.185 kb on - strand at 512.185 kb on - strand at 512.186 kb on + strand at 512.186 kb on + strand at 512.187 kb on - strand at 512.187 kb on - strand at 512.241 kb on + strand, within SMc02181 at 512.242 kb on - strand, within SMc02181 at 512.443 kb on - strand, within SMc02181 at 512.538 kb on + strand, within SMc02181 at 512.539 kb on - strand, within SMc02181 at 512.558 kb on - strand, within SMc02181 at 512.825 kb on + strand, within SMc02181 at 512.826 kb on - strand, within SMc02181 at 512.826 kb on - strand, within SMc02181 at 512.826 kb on - strand, within SMc02181 at 513.477 kb on + strand, within SMc02181 at 513.478 kb on - strand, within SMc02181 at 513.480 kb on + strand, within SMc02181 at 513.481 kb on - strand, within SMc02181 at 513.841 kb on - strand, within SMc02181 at 514.104 kb on + strand, within SMc02181 at 514.105 kb on - strand, within SMc02181 at 514.105 kb on - strand, within SMc02181 at 514.152 kb on + strand, within SMc02181 at 514.153 kb on - strand, within SMc02181 at 514.191 kb on + strand, within SMc02181 at 514.227 kb on + strand, within SMc02181 at 514.227 kb on + strand, within SMc02181 at 514.227 kb on + strand, within SMc02181 at 514.228 kb on - strand, within SMc02181 at 514.228 kb on - strand, within SMc02181 at 514.228 kb on - strand, within SMc02181 at 514.228 kb on - strand, within SMc02181 at 514.228 kb on - strand, within SMc02181 at 514.318 kb on - strand, within SMc02181 at 514.318 kb on - strand, within SMc02181 at 514.405 kb on - strand, within SMc02181 at 514.626 kb on + strand, within SMc02181 at 514.703 kb on - strand, within SMc02181 at 514.752 kb on + strand, within SMc02181 at 514.753 kb on - strand, within SMc02181 at 514.753 kb on - strand, within SMc02181 at 514.803 kb on + strand, within SMc02181 at 514.804 kb on - strand, within SMc02181 at 514.804 kb on - strand, within SMc02181 at 514.812 kb on + strand, within SMc02181 at 514.813 kb on - strand, within SMc02181 at 514.813 kb on - strand, within SMc02181 at 514.816 kb on - strand, within SMc02181 at 514.864 kb on - strand, within SMc02181 at 514.864 kb on - strand, within SMc02181 at 514.869 kb on + strand, within SMc02181 at 514.870 kb on - strand, within SMc02181 at 514.897 kb on + strand, within SMc02181 at 514.897 kb on + strand, within SMc02181 at 514.898 kb on - strand, within SMc02181 at 515.284 kb on + strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.705 kb on - strand at 515.705 kb on - strand at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.793 kb on - strand, within SMc02180 at 515.793 kb on - strand, within SMc02180 at 515.892 kb on + strand, within SMc02180 at 515.892 kb on + strand at 515.892 kb on + strand, within SMc02180 at 515.892 kb on + strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 516.033 kb on + strand at 516.108 kb on + strand at 516.108 kb on + strand at 516.109 kb on - strand at 516.109 kb on - strand at 516.109 kb on - strand at 516.166 kb on + strand, within SMc02179 at 516.218 kb on + strand, within SMc02179 at 516.219 kb on - strand, within SMc02179 at 516.219 kb on - strand, within SMc02179 at 516.309 kb on - strand, within SMc02179 at 516.343 kb on + strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.374 kb on + strand, within SMc02179 at 516.375 kb on - strand, within SMc02179 at 516.399 kb on - strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.518 kb on - strand, within SMc02179
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 510,904 + -0.3 510,904 + +0.2 510,905 - -0.6 510,905 - -0.0 510,950 + -0.4 510,962 + +0.3 510,963 - +0.5 511,401 + SMc01701 0.71 -1.5 511,402 - SMc01701 0.71 -0.9 511,613 + -1.7 511,767 - -0.8 511,767 - -0.5 511,767 - -0.8 511,984 + +2.4 512,184 + +1.9 512,185 - +1.9 512,185 - +0.3 512,186 + +1.6 512,186 + +1.3 512,187 - +1.0 512,187 - +2.2 512,241 + SMc02181 0.11 +1.5 512,242 - SMc02181 0.11 +1.1 512,443 - SMc02181 0.17 +0.4 512,538 + SMc02181 0.19 +1.5 512,539 - SMc02181 0.19 +3.5 512,558 - SMc02181 0.20 +0.8 512,825 + SMc02181 0.27 +2.0 512,826 - SMc02181 0.27 -0.4 512,826 - SMc02181 0.27 +2.2 512,826 - SMc02181 0.27 -1.9 513,477 + SMc02181 0.45 +1.4 513,478 - SMc02181 0.45 -1.7 513,480 + SMc02181 0.45 +1.5 513,481 - SMc02181 0.45 +1.8 513,841 - SMc02181 0.55 +1.2 514,104 + SMc02181 0.62 +2.4 514,105 - SMc02181 0.62 -0.6 514,105 - SMc02181 0.62 +1.3 514,152 + SMc02181 0.63 +1.9 514,153 - SMc02181 0.63 +0.3 514,191 + SMc02181 0.64 +1.8 514,227 + SMc02181 0.65 +2.1 514,227 + SMc02181 0.65 +0.4 514,227 + SMc02181 0.65 +1.5 514,228 - SMc02181 0.65 +0.8 514,228 - SMc02181 0.65 -0.6 514,228 - SMc02181 0.65 +0.6 514,228 - SMc02181 0.65 +1.8 514,228 - SMc02181 0.65 +1.1 514,318 - SMc02181 0.67 -1.1 514,318 - SMc02181 0.67 +1.5 514,405 - SMc02181 0.70 +0.8 514,626 + SMc02181 0.76 +0.9 514,703 - SMc02181 0.78 +1.1 514,752 + SMc02181 0.79 +1.4 514,753 - SMc02181 0.79 +1.3 514,753 - SMc02181 0.79 -0.5 514,803 + SMc02181 0.81 +2.2 514,804 - SMc02181 0.81 +1.6 514,804 - SMc02181 0.81 -0.5 514,812 + SMc02181 0.81 +0.8 514,813 - SMc02181 0.81 -0.6 514,813 - SMc02181 0.81 +1.2 514,816 - SMc02181 0.81 +0.9 514,864 - SMc02181 0.82 +1.7 514,864 - SMc02181 0.82 +1.8 514,869 + SMc02181 0.82 +1.2 514,870 - SMc02181 0.82 -0.4 514,897 + SMc02181 0.83 +0.7 514,897 + SMc02181 0.83 +0.8 514,898 - SMc02181 0.83 +1.4 515,284 + +1.8 515,285 - +1.2 515,285 - +2.3 515,285 - +1.4 515,285 - +1.2 515,705 - -0.2 515,705 - +0.3 515,792 + SMc02180 0.27 -0.1 515,792 + SMc02180 0.27 +0.1 515,792 + SMc02180 0.27 +0.1 515,792 + SMc02180 0.27 -0.2 515,792 + SMc02180 0.27 -0.7 515,792 + SMc02180 0.27 +0.3 515,793 - SMc02180 0.27 -0.7 515,793 - SMc02180 0.27 +0.4 515,892 + SMc02180 0.58 +0.4 515,892 + +0.8 515,892 + SMc02180 0.58 +0.7 515,892 + SMc02180 0.58 +0.2 515,893 - SMc02180 0.59 -1.6 515,893 - SMc02180 0.59 +3.3 515,893 - SMc02180 0.59 -0.3 516,033 + +0.8 516,108 + -0.5 516,108 + -0.2 516,109 - -0.1 516,109 - +0.0 516,109 - +0.4 516,166 + SMc02179 0.11 -0.7 516,218 + SMc02179 0.17 -2.0 516,219 - SMc02179 0.17 -0.4 516,219 - SMc02179 0.17 +0.8 516,309 - SMc02179 0.28 -0.0 516,343 + SMc02179 0.32 -0.7 516,344 - SMc02179 0.33 -0.5 516,344 - SMc02179 0.33 +0.3 516,344 - SMc02179 0.33 -0.0 516,344 - SMc02179 0.33 +0.7 516,374 + SMc02179 0.36 -0.6 516,375 - SMc02179 0.36 +0.3 516,399 - SMc02179 0.39 +0.6 516,486 + SMc02179 0.50 +0.6 516,486 + SMc02179 0.50 -0.2 516,486 + SMc02179 0.50 -0.7 516,486 + SMc02179 0.50 -0.1 516,518 - SMc02179 0.54 +0.2
Or see this region's nucleotide sequence