Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02154 and SMc04429 overlap by 4 nucleotides SMc04429 and SMc02153 are separated by 1 nucleotides SMc02153 and SMc02152 overlap by 4 nucleotides
SMc02154: SMc02154 - hypothetical protein, at 551,813 to 554,713
SMc02154
SMc04429: SMc04429 - hypothetical protein, at 554,710 to 555,357
SMc04429
SMc02153: SMc02153 - hypothetical protein, at 555,359 to 556,690
SMc02153
SMc02152: SMc02152 - helicase, at 556,687 to 560,199
SMc02152
Position (kb) 555
556
557 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 554.425 kb on + strand at 554.696 kb on + strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.768 kb on + strand at 554.768 kb on + strand at 554.769 kb on - strand at 555.028 kb on + strand, within SMc04429 at 555.029 kb on - strand, within SMc04429 at 555.029 kb on - strand, within SMc04429 at 555.084 kb on + strand, within SMc04429 at 555.084 kb on + strand, within SMc04429 at 555.085 kb on - strand, within SMc04429 at 555.085 kb on - strand, within SMc04429 at 555.131 kb on - strand, within SMc04429 at 555.156 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.173 kb on - strand, within SMc04429 at 555.210 kb on - strand, within SMc04429 at 555.724 kb on + strand, within SMc02153 at 555.724 kb on + strand, within SMc02153 at 555.725 kb on - strand, within SMc02153 at 555.762 kb on - strand, within SMc02153 at 555.801 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 556.046 kb on + strand, within SMc02153 at 556.176 kb on + strand, within SMc02153 at 556.221 kb on + strand, within SMc02153 at 556.264 kb on - strand, within SMc02153 at 556.266 kb on + strand, within SMc02153 at 556.266 kb on + strand, within SMc02153 at 556.267 kb on - strand, within SMc02153 at 556.291 kb on + strand, within SMc02153 at 556.291 kb on + strand, within SMc02153 at 556.365 kb on + strand, within SMc02153 at 556.366 kb on - strand at 556.366 kb on - strand, within SMc02153 at 556.478 kb on + strand, within SMc02153 at 556.479 kb on - strand, within SMc02153 at 556.519 kb on - strand, within SMc02153 at 556.649 kb on + strand at 556.664 kb on + strand at 556.665 kb on - strand at 556.781 kb on + strand at 556.782 kb on - strand at 556.782 kb on - strand at 556.839 kb on + strand at 556.859 kb on + strand at 556.965 kb on - strand at 557.386 kb on + strand, within SMc02152 at 557.386 kb on + strand, within SMc02152 at 557.387 kb on - strand, within SMc02152 at 557.398 kb on + strand, within SMc02152 at 557.398 kb on + strand, within SMc02152 at 557.398 kb on + strand, within SMc02152 at 557.398 kb on + strand, within SMc02152 at 557.399 kb on - strand, within SMc02152 at 557.399 kb on - strand, within SMc02152 at 557.432 kb on + strand, within SMc02152 at 557.432 kb on + strand, within SMc02152 at 557.433 kb on - strand, within SMc02152 at 557.668 kb on + strand, within SMc02152 at 557.669 kb on - strand, within SMc02152
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 554,425 + +0.8 554,696 + +1.8 554,697 - -0.2 554,697 - +0.5 554,697 - +0.1 554,697 - +0.3 554,768 + +0.5 554,768 + -0.1 554,769 - -0.4 555,028 + SMc04429 0.49 -0.8 555,029 - SMc04429 0.49 -0.5 555,029 - SMc04429 0.49 -0.2 555,084 + SMc04429 0.58 +0.6 555,084 + SMc04429 0.58 +0.3 555,085 - SMc04429 0.58 -2.4 555,085 - SMc04429 0.58 -0.3 555,131 - SMc04429 0.65 -0.7 555,156 + SMc04429 0.69 +0.8 555,172 + SMc04429 0.71 +0.4 555,172 + SMc04429 0.71 -1.7 555,172 + SMc04429 0.71 -1.4 555,172 + SMc04429 0.71 -2.0 555,172 + SMc04429 0.71 -0.4 555,172 + SMc04429 0.71 +1.0 555,173 - SMc04429 0.71 +0.6 555,210 - SMc04429 0.77 -0.5 555,724 + SMc02153 0.27 -0.2 555,724 + SMc02153 0.27 -0.5 555,725 - SMc02153 0.27 -0.7 555,762 - SMc02153 0.30 -0.2 555,801 - SMc02153 0.33 +1.3 555,942 - SMc02153 0.44 +0.7 555,942 - SMc02153 0.44 +0.1 555,942 - SMc02153 0.44 +0.1 556,046 + SMc02153 0.52 -0.8 556,176 + SMc02153 0.61 -0.1 556,221 + SMc02153 0.65 +0.6 556,264 - SMc02153 0.68 -0.1 556,266 + SMc02153 0.68 +1.8 556,266 + SMc02153 0.68 +0.1 556,267 - SMc02153 0.68 -0.2 556,291 + SMc02153 0.70 +1.0 556,291 + SMc02153 0.70 +0.8 556,365 + SMc02153 0.76 +0.6 556,366 - +1.7 556,366 - SMc02153 0.76 +0.9 556,478 + SMc02153 0.84 -2.4 556,479 - SMc02153 0.84 +0.7 556,519 - SMc02153 0.87 +0.0 556,649 + +0.0 556,664 + +0.6 556,665 - -0.9 556,781 + +1.6 556,782 - -1.1 556,782 - -0.0 556,839 + +0.6 556,859 + +1.2 556,965 - +0.6 557,386 + SMc02152 0.20 +3.1 557,386 + SMc02152 0.20 +0.8 557,387 - SMc02152 0.20 +0.0 557,398 + SMc02152 0.20 +0.1 557,398 + SMc02152 0.20 +0.7 557,398 + SMc02152 0.20 +0.7 557,398 + SMc02152 0.20 -0.2 557,399 - SMc02152 0.20 -0.8 557,399 - SMc02152 0.20 -0.9 557,432 + SMc02152 0.21 -1.5 557,432 + SMc02152 0.21 +0.8 557,433 - SMc02152 0.21 -0.1 557,668 + SMc02152 0.28 +0.3 557,669 - SMc02152 0.28 +2.3
Or see this region's nucleotide sequence