Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01974 and SMc01975 are separated by 262 nucleotides SMc01975 and SMc01976 overlap by 4 nucleotides SMc01976 and SMc01977 are separated by 37 nucleotides
SMc01974: SMc01974 - transcriptional regulator, at 2,698,596 to 2,699,288
SMc01974
SMc01975: SMc01975 - transcriptional regulator, at 2,699,551 to 2,700,267
SMc01975
SMc01976: SMc01976 - hypothetical protein, at 2,700,264 to 2,701,436
SMc01976
SMc01977: SMc01977 - sugar-binding periplasmic ABC transporter protein, at 2,701,474 to 2,702,736
SMc01977
Position (kb)
2700
2701
2702 Strain fitness (log2 ratio)
-2
-1
0
1 at 2699.286 kb on + strand at 2699.497 kb on + strand at 2699.509 kb on - strand at 2699.770 kb on - strand, within SMc01975 at 2699.770 kb on - strand, within SMc01975 at 2699.785 kb on + strand, within SMc01975 at 2699.786 kb on - strand, within SMc01975 at 2699.786 kb on - strand, within SMc01975 at 2699.821 kb on - strand, within SMc01975 at 2699.821 kb on - strand, within SMc01975 at 2700.038 kb on - strand, within SMc01975 at 2700.344 kb on - strand at 2700.384 kb on + strand, within SMc01976 at 2700.385 kb on - strand, within SMc01976 at 2700.405 kb on + strand, within SMc01976 at 2700.432 kb on + strand, within SMc01976 at 2700.433 kb on - strand, within SMc01976 at 2700.597 kb on + strand, within SMc01976 at 2700.657 kb on + strand, within SMc01976 at 2700.657 kb on + strand, within SMc01976 at 2700.657 kb on + strand, within SMc01976 at 2700.657 kb on + strand, within SMc01976 at 2700.658 kb on - strand, within SMc01976 at 2700.658 kb on - strand, within SMc01976 at 2700.658 kb on - strand, within SMc01976 at 2700.658 kb on - strand, within SMc01976 at 2700.718 kb on - strand, within SMc01976 at 2700.889 kb on - strand, within SMc01976 at 2700.903 kb on - strand, within SMc01976 at 2700.903 kb on - strand, within SMc01976 at 2700.969 kb on + strand, within SMc01976 at 2700.970 kb on - strand, within SMc01976 at 2700.976 kb on - strand, within SMc01976 at 2700.976 kb on - strand, within SMc01976 at 2700.976 kb on - strand, within SMc01976 at 2701.471 kb on - strand at 2701.471 kb on - strand at 2701.630 kb on - strand, within SMc01977 at 2701.747 kb on + strand, within SMc01977 at 2701.748 kb on - strand, within SMc01977 at 2701.776 kb on - strand, within SMc01977 at 2701.776 kb on - strand, within SMc01977 at 2701.803 kb on + strand, within SMc01977 at 2701.804 kb on - strand, within SMc01977 at 2701.861 kb on + strand, within SMc01977 at 2701.861 kb on + strand, within SMc01977 at 2701.861 kb on + strand, within SMc01977 at 2701.861 kb on + strand, within SMc01977 at 2701.861 kb on + strand, within SMc01977 at 2701.861 kb on + strand, within SMc01977 at 2701.862 kb on - strand, within SMc01977 at 2701.862 kb on - strand, within SMc01977 at 2701.863 kb on + strand, within SMc01977 at 2701.863 kb on + strand, within SMc01977 at 2701.863 kb on + strand, within SMc01977 at 2701.863 kb on + strand, within SMc01977 at 2701.863 kb on + strand, within SMc01977 at 2701.863 kb on + strand, within SMc01977 at 2701.863 kb on + strand, within SMc01977 at 2701.863 kb on + strand, within SMc01977 at 2701.864 kb on - strand, within SMc01977 at 2701.864 kb on - strand, within SMc01977 at 2701.864 kb on - strand, within SMc01977 at 2701.864 kb on - strand, within SMc01977 at 2701.864 kb on - strand, within SMc01977 at 2701.864 kb on - strand, within SMc01977 at 2701.882 kb on + strand, within SMc01977 at 2701.900 kb on + strand, within SMc01977 at 2702.008 kb on + strand, within SMc01977 at 2702.008 kb on + strand, within SMc01977 at 2702.008 kb on + strand, within SMc01977 at 2702.158 kb on + strand, within SMc01977 at 2702.158 kb on + strand, within SMc01977 at 2702.158 kb on + strand, within SMc01977 at 2702.224 kb on + strand, within SMc01977 at 2702.347 kb on - strand, within SMc01977
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 2,699,286 + -0.4 2,699,497 + -2.6 2,699,509 - -0.6 2,699,770 - SMc01975 0.31 +1.2 2,699,770 - SMc01975 0.31 -0.8 2,699,785 + SMc01975 0.33 -0.3 2,699,786 - SMc01975 0.33 -0.3 2,699,786 - SMc01975 0.33 -1.7 2,699,821 - SMc01975 0.38 -0.4 2,699,821 - SMc01975 0.38 +0.6 2,700,038 - SMc01975 0.68 +0.0 2,700,344 - +0.1 2,700,384 + SMc01976 0.10 -0.9 2,700,385 - SMc01976 0.10 -0.1 2,700,405 + SMc01976 0.12 -0.4 2,700,432 + SMc01976 0.14 -1.4 2,700,433 - SMc01976 0.14 +1.5 2,700,597 + SMc01976 0.28 -0.5 2,700,657 + SMc01976 0.34 -0.9 2,700,657 + SMc01976 0.34 +0.1 2,700,657 + SMc01976 0.34 +0.2 2,700,657 + SMc01976 0.34 -0.4 2,700,658 - SMc01976 0.34 +1.2 2,700,658 - SMc01976 0.34 -0.3 2,700,658 - SMc01976 0.34 +0.4 2,700,658 - SMc01976 0.34 +0.3 2,700,718 - SMc01976 0.39 -0.5 2,700,889 - SMc01976 0.53 -0.8 2,700,903 - SMc01976 0.54 -0.2 2,700,903 - SMc01976 0.54 +0.8 2,700,969 + SMc01976 0.60 +0.6 2,700,970 - SMc01976 0.60 +0.5 2,700,976 - SMc01976 0.61 +0.5 2,700,976 - SMc01976 0.61 +0.4 2,700,976 - SMc01976 0.61 +1.3 2,701,471 - +0.2 2,701,471 - -0.1 2,701,630 - SMc01977 0.12 +1.1 2,701,747 + SMc01977 0.22 -0.2 2,701,748 - SMc01977 0.22 +0.1 2,701,776 - SMc01977 0.24 -0.1 2,701,776 - SMc01977 0.24 -0.1 2,701,803 + SMc01977 0.26 -0.6 2,701,804 - SMc01977 0.26 -0.3 2,701,861 + SMc01977 0.31 -0.7 2,701,861 + SMc01977 0.31 -0.1 2,701,861 + SMc01977 0.31 -0.3 2,701,861 + SMc01977 0.31 +1.0 2,701,861 + SMc01977 0.31 -0.0 2,701,861 + SMc01977 0.31 +0.6 2,701,862 - SMc01977 0.31 -0.4 2,701,862 - SMc01977 0.31 +0.2 2,701,863 + SMc01977 0.31 -1.0 2,701,863 + SMc01977 0.31 +0.0 2,701,863 + SMc01977 0.31 -0.2 2,701,863 + SMc01977 0.31 +0.2 2,701,863 + SMc01977 0.31 +0.7 2,701,863 + SMc01977 0.31 -0.5 2,701,863 + SMc01977 0.31 -1.9 2,701,863 + SMc01977 0.31 +0.9 2,701,864 - SMc01977 0.31 +0.2 2,701,864 - SMc01977 0.31 +1.5 2,701,864 - SMc01977 0.31 +0.3 2,701,864 - SMc01977 0.31 +0.5 2,701,864 - SMc01977 0.31 -1.1 2,701,864 - SMc01977 0.31 -0.6 2,701,882 + SMc01977 0.32 +0.7 2,701,900 + SMc01977 0.34 +0.6 2,702,008 + SMc01977 0.42 -0.3 2,702,008 + SMc01977 0.42 -2.7 2,702,008 + SMc01977 0.42 +0.1 2,702,158 + SMc01977 0.54 +0.0 2,702,158 + SMc01977 0.54 +0.8 2,702,158 + SMc01977 0.54 -0.6 2,702,224 + SMc01977 0.59 -0.0 2,702,347 - SMc01977 0.69 +0.6
Or see this region's nucleotide sequence