Strain Fitness in Sinorhizobium meliloti 1021 around SMc01976

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01974 and SMc01975 are separated by 262 nucleotidesSMc01975 and SMc01976 overlap by 4 nucleotidesSMc01976 and SMc01977 are separated by 37 nucleotides SMc01974: SMc01974 - transcriptional regulator, at 2,698,596 to 2,699,288 SMc01974 SMc01975: SMc01975 - transcriptional regulator, at 2,699,551 to 2,700,267 SMc01975 SMc01976: SMc01976 - hypothetical protein, at 2,700,264 to 2,701,436 SMc01976 SMc01977: SMc01977 - sugar-binding periplasmic ABC transporter protein, at 2,701,474 to 2,702,736 SMc01977 Position (kb) 2700 2701 2702Strain fitness (log2 ratio) -2 -1 0 1at 2699.286 kb on + strandat 2699.497 kb on + strandat 2699.509 kb on - strandat 2699.770 kb on - strand, within SMc01975at 2699.770 kb on - strand, within SMc01975at 2699.785 kb on + strand, within SMc01975at 2699.786 kb on - strand, within SMc01975at 2699.786 kb on - strand, within SMc01975at 2699.821 kb on - strand, within SMc01975at 2699.821 kb on - strand, within SMc01975at 2700.038 kb on - strand, within SMc01975at 2700.344 kb on - strandat 2700.384 kb on + strand, within SMc01976at 2700.385 kb on - strand, within SMc01976at 2700.405 kb on + strand, within SMc01976at 2700.432 kb on + strand, within SMc01976at 2700.433 kb on - strand, within SMc01976at 2700.597 kb on + strand, within SMc01976at 2700.657 kb on + strand, within SMc01976at 2700.657 kb on + strand, within SMc01976at 2700.657 kb on + strand, within SMc01976at 2700.657 kb on + strand, within SMc01976at 2700.658 kb on - strand, within SMc01976at 2700.658 kb on - strand, within SMc01976at 2700.658 kb on - strand, within SMc01976at 2700.658 kb on - strand, within SMc01976at 2700.718 kb on - strand, within SMc01976at 2700.889 kb on - strand, within SMc01976at 2700.903 kb on - strand, within SMc01976at 2700.903 kb on - strand, within SMc01976at 2700.969 kb on + strand, within SMc01976at 2700.970 kb on - strand, within SMc01976at 2700.976 kb on - strand, within SMc01976at 2700.976 kb on - strand, within SMc01976at 2700.976 kb on - strand, within SMc01976at 2701.471 kb on - strandat 2701.471 kb on - strandat 2701.630 kb on - strand, within SMc01977at 2701.747 kb on + strand, within SMc01977at 2701.748 kb on - strand, within SMc01977at 2701.776 kb on - strand, within SMc01977at 2701.776 kb on - strand, within SMc01977at 2701.803 kb on + strand, within SMc01977at 2701.804 kb on - strand, within SMc01977at 2701.861 kb on + strand, within SMc01977at 2701.861 kb on + strand, within SMc01977at 2701.861 kb on + strand, within SMc01977at 2701.861 kb on + strand, within SMc01977at 2701.861 kb on + strand, within SMc01977at 2701.861 kb on + strand, within SMc01977at 2701.862 kb on - strand, within SMc01977at 2701.862 kb on - strand, within SMc01977at 2701.863 kb on + strand, within SMc01977at 2701.863 kb on + strand, within SMc01977at 2701.863 kb on + strand, within SMc01977at 2701.863 kb on + strand, within SMc01977at 2701.863 kb on + strand, within SMc01977at 2701.863 kb on + strand, within SMc01977at 2701.863 kb on + strand, within SMc01977at 2701.863 kb on + strand, within SMc01977at 2701.864 kb on - strand, within SMc01977at 2701.864 kb on - strand, within SMc01977at 2701.864 kb on - strand, within SMc01977at 2701.864 kb on - strand, within SMc01977at 2701.864 kb on - strand, within SMc01977at 2701.864 kb on - strand, within SMc01977at 2701.882 kb on + strand, within SMc01977at 2701.900 kb on + strand, within SMc01977at 2702.008 kb on + strand, within SMc01977at 2702.008 kb on + strand, within SMc01977at 2702.008 kb on + strand, within SMc01977at 2702.158 kb on + strand, within SMc01977at 2702.158 kb on + strand, within SMc01977at 2702.158 kb on + strand, within SMc01977at 2702.224 kb on + strand, within SMc01977at 2702.347 kb on - strand, within SMc01977

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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2,699,286 + -0.4
2,699,497 + -2.6
2,699,509 - -0.6
2,699,770 - SMc01975 0.31 +1.2
2,699,770 - SMc01975 0.31 -0.8
2,699,785 + SMc01975 0.33 -0.3
2,699,786 - SMc01975 0.33 -0.3
2,699,786 - SMc01975 0.33 -1.7
2,699,821 - SMc01975 0.38 -0.4
2,699,821 - SMc01975 0.38 +0.6
2,700,038 - SMc01975 0.68 +0.0
2,700,344 - +0.1
2,700,384 + SMc01976 0.10 -0.9
2,700,385 - SMc01976 0.10 -0.1
2,700,405 + SMc01976 0.12 -0.4
2,700,432 + SMc01976 0.14 -1.4
2,700,433 - SMc01976 0.14 +1.5
2,700,597 + SMc01976 0.28 -0.5
2,700,657 + SMc01976 0.34 -0.9
2,700,657 + SMc01976 0.34 +0.1
2,700,657 + SMc01976 0.34 +0.2
2,700,657 + SMc01976 0.34 -0.4
2,700,658 - SMc01976 0.34 +1.2
2,700,658 - SMc01976 0.34 -0.3
2,700,658 - SMc01976 0.34 +0.4
2,700,658 - SMc01976 0.34 +0.3
2,700,718 - SMc01976 0.39 -0.5
2,700,889 - SMc01976 0.53 -0.8
2,700,903 - SMc01976 0.54 -0.2
2,700,903 - SMc01976 0.54 +0.8
2,700,969 + SMc01976 0.60 +0.6
2,700,970 - SMc01976 0.60 +0.5
2,700,976 - SMc01976 0.61 +0.5
2,700,976 - SMc01976 0.61 +0.4
2,700,976 - SMc01976 0.61 +1.3
2,701,471 - +0.2
2,701,471 - -0.1
2,701,630 - SMc01977 0.12 +1.1
2,701,747 + SMc01977 0.22 -0.2
2,701,748 - SMc01977 0.22 +0.1
2,701,776 - SMc01977 0.24 -0.1
2,701,776 - SMc01977 0.24 -0.1
2,701,803 + SMc01977 0.26 -0.6
2,701,804 - SMc01977 0.26 -0.3
2,701,861 + SMc01977 0.31 -0.7
2,701,861 + SMc01977 0.31 -0.1
2,701,861 + SMc01977 0.31 -0.3
2,701,861 + SMc01977 0.31 +1.0
2,701,861 + SMc01977 0.31 -0.0
2,701,861 + SMc01977 0.31 +0.6
2,701,862 - SMc01977 0.31 -0.4
2,701,862 - SMc01977 0.31 +0.2
2,701,863 + SMc01977 0.31 -1.0
2,701,863 + SMc01977 0.31 +0.0
2,701,863 + SMc01977 0.31 -0.2
2,701,863 + SMc01977 0.31 +0.2
2,701,863 + SMc01977 0.31 +0.7
2,701,863 + SMc01977 0.31 -0.5
2,701,863 + SMc01977 0.31 -1.9
2,701,863 + SMc01977 0.31 +0.9
2,701,864 - SMc01977 0.31 +0.2
2,701,864 - SMc01977 0.31 +1.5
2,701,864 - SMc01977 0.31 +0.3
2,701,864 - SMc01977 0.31 +0.5
2,701,864 - SMc01977 0.31 -1.1
2,701,864 - SMc01977 0.31 -0.6
2,701,882 + SMc01977 0.32 +0.7
2,701,900 + SMc01977 0.34 +0.6
2,702,008 + SMc01977 0.42 -0.3
2,702,008 + SMc01977 0.42 -2.7
2,702,008 + SMc01977 0.42 +0.1
2,702,158 + SMc01977 0.54 +0.0
2,702,158 + SMc01977 0.54 +0.8
2,702,158 + SMc01977 0.54 -0.6
2,702,224 + SMc01977 0.59 -0.0
2,702,347 - SMc01977 0.69 +0.6

Or see this region's nucleotide sequence