Strain Fitness in Sinorhizobium meliloti 1021 around SMc01969

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01968 and SMc01969 are separated by 45 nucleotidesSMc01969 and SMc01970 are separated by 5 nucleotides SMc01968: SMc01968 - transcriptional regulator, at 2,690,563 to 2,691,606 SMc01968 SMc01969: SMc01969 - hypothetical protein, at 2,691,652 to 2,692,830 SMc01969 SMc01970: SMc01970 - hypothetical protein, at 2,692,836 to 2,693,681 SMc01970 Position (kb) 2691 2692 2693Strain fitness (log2 ratio) -2 -1 0 1 2at 2690.672 kb on + strand, within SMc01968at 2690.673 kb on - strand, within SMc01968at 2690.673 kb on - strand, within SMc01968at 2690.910 kb on + strand, within SMc01968at 2690.910 kb on + strand, within SMc01968at 2690.911 kb on - strand, within SMc01968at 2691.001 kb on + strand, within SMc01968at 2691.002 kb on - strand, within SMc01968at 2691.002 kb on - strand, within SMc01968at 2691.605 kb on - strandat 2691.605 kb on - strandat 2691.698 kb on + strandat 2691.727 kb on + strandat 2691.728 kb on - strandat 2691.728 kb on - strandat 2691.728 kb on - strandat 2691.836 kb on - strand, within SMc01969at 2691.836 kb on - strand, within SMc01969at 2691.836 kb on - strand, within SMc01969at 2691.884 kb on - strand, within SMc01969at 2691.908 kb on - strand, within SMc01969at 2691.908 kb on - strand, within SMc01969at 2692.024 kb on + strand, within SMc01969at 2692.025 kb on - strand, within SMc01969at 2692.196 kb on - strand, within SMc01969at 2692.222 kb on + strand, within SMc01969at 2692.270 kb on + strand, within SMc01969at 2692.354 kb on + strand, within SMc01969at 2692.627 kb on + strand, within SMc01969at 2693.006 kb on + strand, within SMc01970at 2693.006 kb on + strand, within SMc01970at 2693.007 kb on - strand, within SMc01970at 2693.203 kb on + strand, within SMc01970at 2693.204 kb on - strand, within SMc01970at 2693.213 kb on - strand, within SMc01970at 2693.486 kb on + strand, within SMc01970at 2693.487 kb on - strand, within SMc01970at 2693.782 kb on + strandat 2693.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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2,690,672 + SMc01968 0.10 -0.8
2,690,673 - SMc01968 0.11 -0.6
2,690,673 - SMc01968 0.11 +0.7
2,690,910 + SMc01968 0.33 +1.0
2,690,910 + SMc01968 0.33 +0.5
2,690,911 - SMc01968 0.33 -0.9
2,691,001 + SMc01968 0.42 -0.8
2,691,002 - SMc01968 0.42 +0.1
2,691,002 - SMc01968 0.42 -1.3
2,691,605 - +1.4
2,691,605 - -0.9
2,691,698 + -1.4
2,691,727 + +0.1
2,691,728 - -0.9
2,691,728 - -0.1
2,691,728 - -0.4
2,691,836 - SMc01969 0.16 -1.1
2,691,836 - SMc01969 0.16 -1.7
2,691,836 - SMc01969 0.16 -0.5
2,691,884 - SMc01969 0.20 -1.7
2,691,908 - SMc01969 0.22 -1.7
2,691,908 - SMc01969 0.22 -0.4
2,692,024 + SMc01969 0.32 -0.4
2,692,025 - SMc01969 0.32 +0.5
2,692,196 - SMc01969 0.46 -0.6
2,692,222 + SMc01969 0.48 -0.5
2,692,270 + SMc01969 0.52 -2.3
2,692,354 + SMc01969 0.60 -0.4
2,692,627 + SMc01969 0.83 -0.7
2,693,006 + SMc01970 0.20 +0.6
2,693,006 + SMc01970 0.20 -0.6
2,693,007 - SMc01970 0.20 -0.6
2,693,203 + SMc01970 0.43 -0.3
2,693,204 - SMc01970 0.43 -0.9
2,693,213 - SMc01970 0.45 -0.3
2,693,486 + SMc01970 0.77 +2.5
2,693,487 - SMc01970 0.77 -0.1
2,693,782 + -0.3
2,693,783 - -1.2

Or see this region's nucleotide sequence