Strain Fitness in Sinorhizobium meliloti 1021 around SMc01868

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01869 and SMc01868 are separated by 72 nucleotidesSMc01868 and SMc01867 overlap by 4 nucleotides SMc01869: SMc01869 - transport transmembrane protein, at 2,340,828 to 2,342,138 SMc01869 SMc01868: SMc01868 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,342,211 to 2,343,185 SMc01868 SMc01867: SMc01867 - UDP-N-acetylmuramate--L-alanine ligase, at 2,343,182 to 2,344,597 SMc01867 Position (kb) 2342 2343 2344Strain fitness (log2 ratio) -1 0 1at 2341.321 kb on - strand, within SMc01869at 2341.476 kb on + strand, within SMc01869at 2341.477 kb on - strand, within SMc01869at 2341.477 kb on - strand, within SMc01869at 2341.588 kb on + strand, within SMc01869at 2341.624 kb on + strand, within SMc01869at 2341.629 kb on + strand, within SMc01869at 2341.630 kb on - strand, within SMc01869at 2341.678 kb on - strand, within SMc01869at 2341.702 kb on + strand, within SMc01869at 2341.702 kb on + strand, within SMc01869at 2341.703 kb on - strand, within SMc01869at 2341.790 kb on - strand, within SMc01869at 2341.906 kb on - strand, within SMc01869at 2341.906 kb on - strand, within SMc01869at 2342.043 kb on + strandat 2342.043 kb on + strandat 2342.043 kb on + strandat 2342.043 kb on + strandat 2342.068 kb on - strandat 2342.068 kb on - strandat 2342.147 kb on - strandat 2342.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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2,341,321 - SMc01869 0.38 +0.3
2,341,476 + SMc01869 0.49 +0.8
2,341,477 - SMc01869 0.50 -0.4
2,341,477 - SMc01869 0.50 -0.4
2,341,588 + SMc01869 0.58 -0.1
2,341,624 + SMc01869 0.61 -0.2
2,341,629 + SMc01869 0.61 -0.3
2,341,630 - SMc01869 0.61 -0.3
2,341,678 - SMc01869 0.65 +0.4
2,341,702 + SMc01869 0.67 -1.7
2,341,702 + SMc01869 0.67 -1.0
2,341,703 - SMc01869 0.67 -1.6
2,341,790 - SMc01869 0.73 +1.2
2,341,906 - SMc01869 0.82 -0.2
2,341,906 - SMc01869 0.82 +0.9
2,342,043 + -0.2
2,342,043 + -0.9
2,342,043 + +0.5
2,342,043 + +0.9
2,342,068 - +0.9
2,342,068 - -0.1
2,342,147 - +1.0
2,342,147 - +0.7

Or see this region's nucleotide sequence