Strain Fitness in Sinorhizobium meliloti 1021 around SMc01861

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01862 and SMc01861 are separated by 1 nucleotidesSMc01861 and SMc01860 are separated by 166 nucleotides SMc01862: SMc01862 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase, at 2,349,674 to 2,351,107 SMc01862 SMc01861: SMc01861 - UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, at 2,351,109 to 2,352,569 SMc01861 SMc01860: SMc01860 - penicillin-binding transmembrane protein, at 2,352,736 to 2,354,484 SMc01860 Position (kb) 2351 2352 2353Strain fitness (log2 ratio) -1 0 1at 2352.640 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
2,352,640 - -0.1

Or see this region's nucleotide sequence