Strain Fitness in Sinorhizobium meliloti 1021 around SMc01860

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01861 and SMc01860 are separated by 166 nucleotidesSMc01860 and SMc01859 overlap by 1 nucleotidesSMc01859 and SMc01858 are separated by 6 nucleotides SMc01861: SMc01861 - UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, at 2,351,109 to 2,352,569 SMc01861 SMc01860: SMc01860 - penicillin-binding transmembrane protein, at 2,352,736 to 2,354,484 SMc01860 SMc01859: SMc01859 - hypothetical protein, at 2,354,484 to 2,354,879 SMc01859 SMc01858: SMc01858 - S-adenosyl-methyltransferase MraW, at 2,354,886 to 2,355,911 SMc01858 Position (kb) 2352 2353 2354 2355Strain fitness (log2 ratio) -1 0 1 2 3at 2352.640 kb on - strandat 2355.042 kb on - strand, within SMc01858

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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2,352,640 - -0.1
2,355,042 - SMc01858 0.15 +3.2

Or see this region's nucleotide sequence