Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01726 and SMc01725 are separated by 289 nucleotides SMc01725 and SMc01724 are separated by 107 nucleotides SMc01724 and SMc01723 are separated by 73 nucleotides
SMc01726: SMc01726 - acetylglutamate kinase, at 476,243 to 477,130
SMc01726
SMc01725: SMc01725 - hypothetical protein, at 477,420 to 478,133
SMc01725
SMc01724: SMc01724 - hypothetical protein, at 478,241 to 478,735
SMc01724
SMc01723: SMc01723 - hypothetical protein, at 478,809 to 479,348
SMc01723
Position (kb) 477
478
479 Strain fitness (log2 ratio) -1
0
1
2
3 at 476.556 kb on + strand, within SMc01726 at 476.557 kb on - strand, within SMc01726 at 476.557 kb on - strand, within SMc01726 at 476.557 kb on - strand, within SMc01726 at 477.076 kb on - strand at 477.076 kb on - strand at 477.203 kb on + strand at 477.204 kb on - strand at 477.480 kb on + strand at 477.480 kb on + strand at 477.481 kb on - strand at 477.481 kb on - strand at 477.481 kb on - strand at 477.481 kb on - strand at 477.481 kb on - strand at 477.603 kb on + strand, within SMc01725 at 477.604 kb on - strand, within SMc01725 at 477.730 kb on + strand, within SMc01725 at 477.797 kb on + strand, within SMc01725 at 478.131 kb on + strand at 478.132 kb on - strand at 478.132 kb on - strand at 478.207 kb on + strand at 478.207 kb on + strand at 478.208 kb on - strand at 478.212 kb on + strand at 478.502 kb on + strand, within SMc01724 at 478.520 kb on + strand, within SMc01724 at 478.521 kb on - strand, within SMc01724
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 476,556 + SMc01726 0.35 +3.5 476,557 - SMc01726 0.35 +3.5 476,557 - SMc01726 0.35 +3.2 476,557 - SMc01726 0.35 +2.6 477,076 - +2.4 477,076 - +2.7 477,203 + +0.5 477,204 - +0.7 477,480 + +1.9 477,480 + -0.2 477,481 - -0.2 477,481 - -0.1 477,481 - -1.2 477,481 - +0.1 477,481 - +0.6 477,603 + SMc01725 0.26 -0.1 477,604 - SMc01725 0.26 -0.5 477,730 + SMc01725 0.43 -1.2 477,797 + SMc01725 0.53 -1.5 478,131 + +1.6 478,132 - -1.5 478,132 - -0.8 478,207 + +0.1 478,207 + -0.2 478,208 - +0.1 478,212 + -0.4 478,502 + SMc01724 0.53 +1.1 478,520 + SMc01724 0.56 -0.5 478,521 - SMc01724 0.57 +1.4
Or see this region's nucleotide sequence