Strain Fitness in Sinorhizobium meliloti 1021 around SMc01443

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01441 and SMc01442 are separated by 194 nucleotidesSMc01442 and SMc01443 are separated by 13 nucleotidesSMc01443 and SMc01444 are separated by 61 nucleotides SMc01441: SMc01441 - membrane bound protease, at 2,285,618 to 2,286,706 SMc01441 SMc01442: SMc01442 - dihydrofolate reductase, at 2,286,901 to 2,287,443 SMc01442 SMc01443: SMc01443 - glutathione S-transferase, at 2,287,457 to 2,288,062 SMc01443 SMc01444: SMc01444 - thymidylate synthase, at 2,288,124 to 2,288,918 SMc01444 Position (kb) 2287 2288 2289Strain fitness (log2 ratio) -2 -1 0 1at 2286.461 kb on - strand, within SMc01441at 2286.462 kb on + strand, within SMc01441at 2286.783 kb on + strandat 2286.784 kb on - strandat 2286.788 kb on - strandat 2286.788 kb on - strandat 2286.788 kb on - strandat 2286.788 kb on - strandat 2286.885 kb on - strandat 2287.537 kb on - strand, within SMc01443at 2287.544 kb on + strand, within SMc01443at 2287.544 kb on + strand, within SMc01443at 2287.545 kb on - strand, within SMc01443at 2287.545 kb on - strand, within SMc01443at 2287.545 kb on - strand, within SMc01443at 2287.635 kb on + strand, within SMc01443at 2287.636 kb on - strand, within SMc01443at 2287.636 kb on - strand, within SMc01443at 2287.636 kb on - strand, within SMc01443at 2287.649 kb on - strand, within SMc01443at 2287.683 kb on + strand, within SMc01443at 2287.684 kb on - strand, within SMc01443at 2287.684 kb on - strand, within SMc01443at 2287.726 kb on + strand, within SMc01443at 2287.727 kb on - strand, within SMc01443at 2287.727 kb on - strand, within SMc01443at 2287.727 kb on - strand, within SMc01443at 2287.727 kb on - strand, within SMc01443at 2287.727 kb on - strand, within SMc01443at 2287.727 kb on - strand, within SMc01443at 2287.761 kb on + strand, within SMc01443at 2287.764 kb on + strand, within SMc01443at 2287.765 kb on - strand, within SMc01443at 2287.782 kb on + strand, within SMc01443at 2287.782 kb on + strand, within SMc01443at 2287.783 kb on - strand, within SMc01443at 2287.848 kb on + strand, within SMc01443at 2287.848 kb on + strand, within SMc01443at 2287.848 kb on + strand, within SMc01443at 2287.849 kb on - strand, within SMc01443at 2287.849 kb on - strand, within SMc01443at 2288.121 kb on + strandat 2288.122 kb on - strandat 2288.944 kb on - strandat 2289.056 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
2,286,461 - SMc01441 0.77 -1.4
2,286,462 + SMc01441 0.78 -0.2
2,286,783 + +0.4
2,286,784 - -0.3
2,286,788 - +0.2
2,286,788 - -0.5
2,286,788 - -0.4
2,286,788 - -0.4
2,286,885 - +0.7
2,287,537 - SMc01443 0.13 -0.1
2,287,544 + SMc01443 0.14 -0.3
2,287,544 + SMc01443 0.14 -0.8
2,287,545 - SMc01443 0.15 -0.0
2,287,545 - SMc01443 0.15 -0.3
2,287,545 - SMc01443 0.15 +0.6
2,287,635 + SMc01443 0.29 +0.3
2,287,636 - SMc01443 0.30 -0.0
2,287,636 - SMc01443 0.30 +0.9
2,287,636 - SMc01443 0.30 +0.5
2,287,649 - SMc01443 0.32 +0.2
2,287,683 + SMc01443 0.37 +0.3
2,287,684 - SMc01443 0.37 +0.5
2,287,684 - SMc01443 0.37 +0.1
2,287,726 + SMc01443 0.44 -0.1
2,287,727 - SMc01443 0.45 +1.3
2,287,727 - SMc01443 0.45 +0.0
2,287,727 - SMc01443 0.45 +0.2
2,287,727 - SMc01443 0.45 +0.8
2,287,727 - SMc01443 0.45 +0.5
2,287,727 - SMc01443 0.45 -1.5
2,287,761 + SMc01443 0.50 -0.3
2,287,764 + SMc01443 0.51 -0.3
2,287,765 - SMc01443 0.51 +0.3
2,287,782 + SMc01443 0.54 -0.5
2,287,782 + SMc01443 0.54 -0.6
2,287,783 - SMc01443 0.54 -0.5
2,287,848 + SMc01443 0.65 -0.3
2,287,848 + SMc01443 0.65 -0.1
2,287,848 + SMc01443 0.65 +0.1
2,287,849 - SMc01443 0.65 -1.8
2,287,849 - SMc01443 0.65 -0.2
2,288,121 + -0.4
2,288,122 - +0.1
2,288,944 - -0.2
2,289,056 + -0.6

Or see this region's nucleotide sequence