Strain Fitness in Sinorhizobium meliloti 1021 around SMc01334

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01335 and SMc01334 are separated by 364 nucleotidesSMc01334 and SMc01333 are separated by 201 nucleotides SMc01335: SMc01335 - N-acetylmuramoyl-L-alanine amidase AMIC precursor transmembrane protein, at 1,445,119 to 1,446,399 SMc01335 SMc01334: SMc01334 - penicillin-binding 1A transmembrane protein, at 1,446,764 to 1,449,217 SMc01334 SMc01333: SMc01333 - peptide chain release factor 2, at 1,449,419 to 1,450,447 SMc01333 Position (kb) 1446 1447 1448 1449 1450Strain fitness (log2 ratio) -1 0 1 2at 1446.513 kb on + strandat 1446.514 kb on - strandat 1446.740 kb on + strandat 1446.748 kb on + strandat 1449.251 kb on + strandat 1449.251 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,446,513 + +1.7
1,446,514 - -0.8
1,446,740 + +0.2
1,446,748 + +1.8
1,449,251 + -1.0
1,449,251 + -1.2

Or see this region's nucleotide sequence