Strain Fitness in Sinorhizobium meliloti 1021 around SMc01224

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01225 and SMc01224 are separated by 106 nucleotidesSMc01224 and SMc01223 are separated by 433 nucleotides SMc01225: SMc01225 - transcriptional regulator, at 1,699,144 to 1,700,052 SMc01225 SMc01224: SMc01224 - thioredoxin reductase, at 1,700,159 to 1,701,133 SMc01224 SMc01223: SMc01223 - transcriptional regulator, at 1,701,567 to 1,702,037 SMc01223 Position (kb) 1700 1701 1702Strain fitness (log2 ratio) -1 0 1 2 3at 1701.207 kb on - strandat 1701.212 kb on - strandat 1701.252 kb on + strandat 1701.303 kb on - strandat 1701.327 kb on + strandat 1701.328 kb on - strandat 1701.335 kb on + strandat 1701.336 kb on - strandat 1701.336 kb on - strandat 1701.358 kb on + strandat 1701.358 kb on + strandat 1701.358 kb on + strandat 1701.359 kb on - strandat 1701.359 kb on - strandat 1701.395 kb on + strandat 1701.410 kb on - strandat 1701.519 kb on + strandat 1701.519 kb on + strandat 1701.524 kb on + strandat 1701.524 kb on + strandat 1701.525 kb on - strandat 1701.599 kb on + strandat 1701.600 kb on - strandat 1701.607 kb on + strandat 1701.608 kb on - strandat 1701.608 kb on - strandat 1701.733 kb on - strand, within SMc01223at 1701.766 kb on - strand, within SMc01223at 1701.945 kb on - strand, within SMc01223

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,701,207 - -0.3
1,701,212 - +0.2
1,701,252 + -1.1
1,701,303 - +1.5
1,701,327 + -1.5
1,701,328 - +0.3
1,701,335 + -1.4
1,701,336 - -0.0
1,701,336 - -0.1
1,701,358 + -0.3
1,701,358 + -1.5
1,701,358 + -0.9
1,701,359 - +1.1
1,701,359 - +0.4
1,701,395 + -0.9
1,701,410 - +0.8
1,701,519 + -1.1
1,701,519 + +0.7
1,701,524 + +0.8
1,701,524 + -0.8
1,701,525 - +1.3
1,701,599 + +1.4
1,701,600 - +0.2
1,701,607 + +0.4
1,701,608 - +1.2
1,701,608 - +2.3
1,701,733 - SMc01223 0.35 +0.9
1,701,766 - SMc01223 0.42 +0.4
1,701,945 - SMc01223 0.80 +3.3

Or see this region's nucleotide sequence