Strain Fitness in Sinorhizobium meliloti 1021 around SMc01188

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01190 and SMc01189 overlap by 4 nucleotidesSMc01189 and SMc01188 are separated by 57 nucleotidesSMc01188 and SMc01187 are separated by 56 nucleotides SMc01190: SMc01190 - DNA polymerase III subunit delta', at 1,739,754 to 1,740,785 SMc01190 SMc01189: SMc01189 - thymidylate kinase, at 1,740,782 to 1,741,486 SMc01189 SMc01188: SMc01188 - penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein, at 1,741,544 to 1,742,698 SMc01188 SMc01187: SMc01187 - rare lipoprotein A, at 1,742,755 to 1,743,795 SMc01187 Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -2 -1 0 1at 1740.728 kb on - strandat 1740.834 kb on - strandat 1741.488 kb on - strandat 1741.488 kb on - strandat 1741.488 kb on - strandat 1742.725 kb on - strandat 1742.725 kb on - strandat 1742.725 kb on - strandat 1742.725 kb on - strandat 1742.725 kb on - strandat 1742.792 kb on + strandat 1742.882 kb on + strand, within SMc01187at 1742.883 kb on - strand, within SMc01187at 1742.895 kb on - strand, within SMc01187

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,740,728 - -0.2
1,740,834 - -1.5
1,741,488 - -0.8
1,741,488 - +0.2
1,741,488 - -0.2
1,742,725 - +1.2
1,742,725 - -0.7
1,742,725 - +0.5
1,742,725 - -0.3
1,742,725 - -0.7
1,742,792 + +0.5
1,742,882 + SMc01187 0.12 -1.6
1,742,883 - SMc01187 0.12 +0.4
1,742,895 - SMc01187 0.13 -1.9

Or see this region's nucleotide sequence