Strain Fitness in Sinorhizobium meliloti 1021 around SMc00915

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00917 and SMc00916 are separated by 119 nucleotidesSMc00916 and SMc00915 overlap by 226 nucleotidesSMc00915 and SMc00914 are separated by 87 nucleotides SMc00917: SMc00917 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 865,805 to 866,500 SMc00917 SMc00916: SMc00916 - glutathione S-transferase, at 866,620 to 867,363 SMc00916 SMc00915: SMc00915 - hypothetical protein, at 867,138 to 867,329 SMc00915 SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634 SMc00914 Position (kb) 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 866.217 kb on - strand, within SMc00917at 866.217 kb on - strand, within SMc00917at 866.452 kb on + strandat 866.452 kb on + strandat 866.569 kb on + strandat 866.569 kb on + strandat 866.606 kb on + strandat 866.689 kb on + strandat 866.689 kb on + strandat 866.753 kb on - strand, within SMc00916at 866.753 kb on - strand, within SMc00916at 866.905 kb on + strand, within SMc00916at 866.905 kb on + strand, within SMc00916at 866.906 kb on - strand, within SMc00916at 866.906 kb on - strand, within SMc00916at 866.957 kb on - strand, within SMc00916at 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.160 kb on - strandat 867.160 kb on - strandat 867.183 kb on + strandat 867.213 kb on + strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.237 kb on + strandat 867.238 kb on - strandat 867.238 kb on - strandat 867.238 kb on - strandat 867.239 kb on + strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.327 kb on + strandat 867.328 kb on - strandat 867.328 kb on - strandat 867.565 kb on - strand, within SMc00914at 867.689 kb on - strand, within SMc00914at 867.718 kb on - strand, within SMc00914at 867.718 kb on - strand, within SMc00914at 867.880 kb on - strand, within SMc00914at 868.027 kb on + strand, within SMc00914at 868.027 kb on + strand, within SMc00914

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
866,217 - SMc00917 0.59 +0.1
866,217 - SMc00917 0.59 -1.3
866,452 + -0.5
866,452 + +0.3
866,569 + -0.3
866,569 + -1.1
866,606 + -0.3
866,689 + +0.1
866,689 + +0.6
866,753 - SMc00916 0.18 +0.0
866,753 - SMc00916 0.18 -0.7
866,905 + SMc00916 0.38 -0.0
866,905 + SMc00916 0.38 +1.0
866,906 - SMc00916 0.38 -0.1
866,906 - SMc00916 0.38 +0.4
866,957 - SMc00916 0.45 -0.3
867,159 + +0.2
867,159 + -0.0
867,159 + -0.1
867,159 + +0.6
867,159 + +0.7
867,159 + -0.4
867,159 + +0.9
867,160 - +0.1
867,160 - -0.5
867,183 + -0.3
867,213 + +0.2
867,214 - -0.1
867,214 - -0.3
867,237 + -1.9
867,238 - +0.5
867,238 - -0.9
867,238 - +0.1
867,239 + -1.0
867,240 - -0.2
867,240 - +0.1
867,240 - -0.1
867,327 + -0.4
867,328 - +2.2
867,328 - +0.2
867,565 - SMc00914 0.12 -1.1
867,689 - SMc00914 0.22 +0.5
867,718 - SMc00914 0.25 -0.1
867,718 - SMc00914 0.25 -1.9
867,880 - SMc00914 0.38 -2.6
868,027 + SMc00914 0.50 -3.1
868,027 + SMc00914 0.50 -1.4

Or see this region's nucleotide sequence