Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00696 and SMc00695 are separated by 4 nucleotides SMc00695 and SMc00694 are separated by 84 nucleotides SMc00694 and SMc00693 overlap by 4 nucleotides SMc00693 and SMc00692 are separated by 287 nucleotides
SMc00696: SMc00696 - 3-dehydroquinate synthase, at 2,883,540 to 2,884,673
SMc00696
SMc00695: SMc00695 - shikimate kinase, at 2,884,678 to 2,885,256
SMc00695
SMc00694: SMc00694 - hypothetical protein, at 2,885,341 to 2,885,643
SMc00694
SMc00693: SMc00693 - hypothetical protein, at 2,885,640 to 2,885,915
SMc00693
SMc00692: SMc00692 - signal peptide protein, at 2,886,203 to 2,886,352
SMc00692
Position (kb)
2884
2885
2886 Strain fitness (log2 ratio)
-2
-1
0
1 at 2885.338 kb on + strand at 2885.339 kb on - strand at 2885.339 kb on - strand at 2885.339 kb on - strand at 2885.342 kb on + strand at 2885.366 kb on + strand at 2885.397 kb on + strand, within SMc00694 at 2885.397 kb on + strand, within SMc00694 at 2885.397 kb on + strand, within SMc00694 at 2885.401 kb on + strand, within SMc00694 at 2885.402 kb on - strand, within SMc00694 at 2885.402 kb on - strand, within SMc00694 at 2885.423 kb on + strand, within SMc00694 at 2885.424 kb on - strand, within SMc00694 at 2885.458 kb on - strand, within SMc00694 at 2885.458 kb on - strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.568 kb on + strand, within SMc00694 at 2885.600 kb on - strand, within SMc00694 at 2885.600 kb on - strand, within SMc00694 at 2885.929 kb on - strand at 2885.934 kb on + strand at 2886.026 kb on + strand at 2886.090 kb on + strand at 2886.090 kb on + strand at 2886.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 2,885,338 + -1.2 2,885,339 - -0.1 2,885,339 - -0.1 2,885,339 - -0.0 2,885,342 + -2.1 2,885,366 + +1.1 2,885,397 + SMc00694 0.18 -0.2 2,885,397 + SMc00694 0.18 -0.6 2,885,397 + SMc00694 0.18 -1.1 2,885,401 + SMc00694 0.20 -0.6 2,885,402 - SMc00694 0.20 -0.2 2,885,402 - SMc00694 0.20 -0.7 2,885,423 + SMc00694 0.27 -0.3 2,885,424 - SMc00694 0.27 -0.3 2,885,458 - SMc00694 0.39 -0.3 2,885,458 - SMc00694 0.39 -0.5 2,885,546 + SMc00694 0.68 +0.2 2,885,546 + SMc00694 0.68 -2.4 2,885,546 + SMc00694 0.68 +0.2 2,885,547 - SMc00694 0.68 +0.3 2,885,547 - SMc00694 0.68 -0.1 2,885,547 - SMc00694 0.68 -0.1 2,885,568 + SMc00694 0.75 -0.2 2,885,600 - SMc00694 0.85 +1.2 2,885,600 - SMc00694 0.85 +0.3 2,885,929 - +1.7 2,885,934 + -0.6 2,886,026 + +0.0 2,886,090 + -0.1 2,886,090 + +0.3 2,886,116 + -0.6
Or see this region's nucleotide sequence