Strain Fitness in Sinorhizobium meliloti 1021 around SMc00683

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00684 and SMc00683 are separated by 13 nucleotidesSMc00683 and SMc00682 are separated by 251 nucleotides SMc00684: SMc00684 - hypothetical protein, at 2,891,001 to 2,892,146 SMc00684 SMc00683: SMc00683 - penicillin-binding protein, at 2,892,160 to 2,893,242 SMc00683 SMc00682: SMc00682 - hippurate hydrolase, at 2,893,494 to 2,894,657 SMc00682 Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -1 0 1 2at 2891.259 kb on - strand, within SMc00684at 2891.524 kb on + strand, within SMc00684at 2891.525 kb on - strand, within SMc00684at 2893.335 kb on - strandat 2893.339 kb on - strandat 2893.339 kb on - strandat 2893.339 kb on - strandat 2893.339 kb on - strandat 2893.344 kb on - strandat 2893.344 kb on - strandat 2893.504 kb on + strandat 2893.817 kb on + strand, within SMc00682at 2893.846 kb on - strand, within SMc00682at 2893.974 kb on + strand, within SMc00682at 2893.975 kb on - strand, within SMc00682at 2893.975 kb on - strand, within SMc00682

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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2,891,259 - SMc00684 0.23 +0.0
2,891,524 + SMc00684 0.46 -1.0
2,891,525 - SMc00684 0.46 -0.1
2,893,335 - +2.7
2,893,339 - +0.8
2,893,339 - +0.2
2,893,339 - +0.0
2,893,339 - +0.6
2,893,344 - +1.1
2,893,344 - +0.5
2,893,504 + +0.4
2,893,817 + SMc00682 0.28 -0.9
2,893,846 - SMc00682 0.30 +0.3
2,893,974 + SMc00682 0.41 -0.2
2,893,975 - SMc00682 0.41 -0.4
2,893,975 - SMc00682 0.41 +1.0

Or see this region's nucleotide sequence