Strain Fitness in Sinorhizobium meliloti 1021 around SMc00475

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00476 and SMc00475 are separated by 45 nucleotidesSMc00475 and SMc00760 are separated by 239 nucleotides SMc00476: SMc00476 - transport transmembrane protein, at 1,943,574 to 1,945,229 SMc00476 SMc00475: SMc00475 - alanyl-tRNA synthetase, at 1,945,275 to 1,947,938 SMc00475 SMc00760: SMc00760 - recombinase A, at 1,948,178 to 1,949,263 SMc00760 Position (kb) 1945 1946 1947 1948Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1944.455 kb on + strand, within SMc00476at 1944.456 kb on - strand, within SMc00476at 1944.610 kb on - strand, within SMc00476at 1944.610 kb on - strand, within SMc00476at 1944.611 kb on + strand, within SMc00476at 1944.611 kb on + strand, within SMc00476at 1944.611 kb on + strand, within SMc00476at 1944.611 kb on + strand, within SMc00476at 1944.612 kb on - strand, within SMc00476at 1944.612 kb on - strand, within SMc00476at 1944.612 kb on - strand, within SMc00476at 1944.612 kb on - strand, within SMc00476at 1944.612 kb on - strand, within SMc00476at 1944.613 kb on + strand, within SMc00476at 1944.613 kb on + strand, within SMc00476at 1944.614 kb on - strand, within SMc00476at 1944.614 kb on - strand, within SMc00476at 1944.614 kb on - strand, within SMc00476at 1944.614 kb on - strand, within SMc00476at 1944.614 kb on - strand, within SMc00476at 1944.759 kb on - strand, within SMc00476at 1944.759 kb on - strand, within SMc00476at 1944.767 kb on + strand, within SMc00476at 1944.918 kb on + strand, within SMc00476at 1945.064 kb on + strandat 1945.064 kb on + strandat 1945.064 kb on + strandat 1945.277 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.957 kb on - strandat 1947.957 kb on - strandat 1947.957 kb on - strandat 1948.082 kb on - strandat 1948.082 kb on - strandat 1948.082 kb on - strandat 1948.093 kb on - strandat 1948.179 kb on + strandat 1948.353 kb on + strand, within SMc00760at 1948.353 kb on + strand, within SMc00760at 1948.353 kb on + strand, within SMc00760at 1948.441 kb on - strand, within SMc00760at 1948.580 kb on + strand, within SMc00760at 1948.923 kb on + strand, within SMc00760at 1948.923 kb on + strand, within SMc00760

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,944,455 + SMc00476 0.53 +0.1
1,944,456 - SMc00476 0.53 +1.2
1,944,610 - SMc00476 0.63 -0.0
1,944,610 - SMc00476 0.63 +0.6
1,944,611 + SMc00476 0.63 +0.3
1,944,611 + SMc00476 0.63 -0.8
1,944,611 + SMc00476 0.63 +1.5
1,944,611 + SMc00476 0.63 -0.1
1,944,612 - SMc00476 0.63 -1.3
1,944,612 - SMc00476 0.63 -1.1
1,944,612 - SMc00476 0.63 -0.7
1,944,612 - SMc00476 0.63 +0.9
1,944,612 - SMc00476 0.63 +0.4
1,944,613 + SMc00476 0.63 -0.6
1,944,613 + SMc00476 0.63 +1.0
1,944,614 - SMc00476 0.63 -0.7
1,944,614 - SMc00476 0.63 -0.9
1,944,614 - SMc00476 0.63 -0.5
1,944,614 - SMc00476 0.63 -0.7
1,944,614 - SMc00476 0.63 -0.8
1,944,759 - SMc00476 0.72 -1.1
1,944,759 - SMc00476 0.72 +0.2
1,944,767 + SMc00476 0.72 -0.5
1,944,918 + SMc00476 0.81 -1.6
1,945,064 + +0.2
1,945,064 + +0.3
1,945,064 + +0.0
1,945,277 - +0.1
1,947,949 - +0.9
1,947,949 - +1.5
1,947,949 - +2.3
1,947,949 - +3.7
1,947,949 - +4.1
1,947,949 - +3.7
1,947,957 - +0.0
1,947,957 - +0.9
1,947,957 - +0.4
1,948,082 - +0.2
1,948,082 - +0.2
1,948,082 - -0.3
1,948,093 - -0.2
1,948,179 + -0.4
1,948,353 + SMc00760 0.16 -2.5
1,948,353 + SMc00760 0.16 -2.5
1,948,353 + SMc00760 0.16 -2.0
1,948,441 - SMc00760 0.24 -1.4
1,948,580 + SMc00760 0.37 -1.1
1,948,923 + SMc00760 0.69 -2.0
1,948,923 + SMc00760 0.69 -2.2

Or see this region's nucleotide sequence