Strain Fitness in Sinorhizobium meliloti 1021 around SMc00472

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00473 and SMc00472 are separated by 138 nucleotidesSMc00472 and SMc00471 are separated by 427 nucleotides SMc00473: SMc00473 - carbohydrate kinase, at 1,949,597 to 1,950,556 SMc00473 SMc00472: SMc00472 - hypothetical protein, at 1,950,695 to 1,951,627 SMc00472 SMc00471: SMc00471 - sensor histidine kinase transmembrane protein, at 1,952,055 to 1,954,664 SMc00471 Position (kb) 1950 1951 1952Strain fitness (log2 ratio) -2 -1 0 1 2at 1949.891 kb on + strand, within SMc00473at 1949.892 kb on - strand, within SMc00473at 1949.892 kb on - strand, within SMc00473at 1949.893 kb on + strand, within SMc00473at 1949.893 kb on + strand, within SMc00473at 1949.893 kb on + strand, within SMc00473at 1949.951 kb on + strand, within SMc00473at 1949.951 kb on + strand, within SMc00473at 1949.952 kb on - strand, within SMc00473at 1949.952 kb on - strand, within SMc00473at 1950.325 kb on + strand, within SMc00473at 1950.603 kb on + strandat 1950.732 kb on - strandat 1950.732 kb on - strandat 1950.815 kb on + strand, within SMc00472at 1950.914 kb on - strand, within SMc00472at 1951.128 kb on + strand, within SMc00472at 1951.129 kb on - strand, within SMc00472at 1951.253 kb on + strand, within SMc00472at 1951.253 kb on + strand, within SMc00472at 1951.253 kb on + strand, within SMc00472at 1951.253 kb on + strand, within SMc00472at 1951.254 kb on - strand, within SMc00472at 1951.408 kb on - strand, within SMc00472at 1951.442 kb on + strand, within SMc00472at 1951.442 kb on + strand, within SMc00472at 1951.443 kb on - strand, within SMc00472at 1951.443 kb on - strand, within SMc00472at 1951.771 kb on - strandat 1951.771 kb on - strandat 1951.771 kb on - strandat 1951.771 kb on - strandat 1951.771 kb on - strandat 1951.771 kb on - strandat 1951.771 kb on - strandat 1951.773 kb on - strandat 1951.773 kb on - strandat 1952.034 kb on + strandat 1952.034 kb on + strandat 1952.034 kb on + strandat 1952.034 kb on + strandat 1952.034 kb on + strandat 1952.035 kb on - strandat 1952.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,949,891 + SMc00473 0.31 -0.3
1,949,892 - SMc00473 0.31 -0.5
1,949,892 - SMc00473 0.31 +1.0
1,949,893 + SMc00473 0.31 -0.2
1,949,893 + SMc00473 0.31 -0.0
1,949,893 + SMc00473 0.31 -0.1
1,949,951 + SMc00473 0.37 +0.7
1,949,951 + SMc00473 0.37 +0.3
1,949,952 - SMc00473 0.37 -0.5
1,949,952 - SMc00473 0.37 -2.0
1,950,325 + SMc00473 0.76 -0.4
1,950,603 + -0.6
1,950,732 - -1.1
1,950,732 - +2.2
1,950,815 + SMc00472 0.13 -0.5
1,950,914 - SMc00472 0.23 -0.1
1,951,128 + SMc00472 0.46 -0.2
1,951,129 - SMc00472 0.47 -1.0
1,951,253 + SMc00472 0.60 -0.1
1,951,253 + SMc00472 0.60 -0.1
1,951,253 + SMc00472 0.60 -0.3
1,951,253 + SMc00472 0.60 -0.2
1,951,254 - SMc00472 0.60 +0.2
1,951,408 - SMc00472 0.76 -0.1
1,951,442 + SMc00472 0.80 -0.4
1,951,442 + SMc00472 0.80 -2.3
1,951,443 - SMc00472 0.80 -0.0
1,951,443 - SMc00472 0.80 +0.5
1,951,771 - -0.4
1,951,771 - -1.4
1,951,771 - -0.5
1,951,771 - -0.3
1,951,771 - +0.6
1,951,771 - -0.8
1,951,771 - -0.3
1,951,773 - -0.2
1,951,773 - -0.6
1,952,034 + +0.8
1,952,034 + -0.3
1,952,034 + -1.4
1,952,034 + +0.7
1,952,034 + +0.2
1,952,035 - -0.8
1,952,035 - +0.1

Or see this region's nucleotide sequence