Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00473 and SMc00472 are separated by 138 nucleotides SMc00472 and SMc00471 are separated by 427 nucleotides
SMc00473: SMc00473 - carbohydrate kinase, at 1,949,597 to 1,950,556
SMc00473
SMc00472: SMc00472 - hypothetical protein, at 1,950,695 to 1,951,627
SMc00472
SMc00471: SMc00471 - sensor histidine kinase transmembrane protein, at 1,952,055 to 1,954,664
SMc00471
Position (kb)
1950
1951
1952 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1949.891 kb on + strand, within SMc00473 at 1949.892 kb on - strand, within SMc00473 at 1949.892 kb on - strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.951 kb on + strand, within SMc00473 at 1949.951 kb on + strand, within SMc00473 at 1949.952 kb on - strand, within SMc00473 at 1949.952 kb on - strand, within SMc00473 at 1950.325 kb on + strand, within SMc00473 at 1950.603 kb on + strand at 1950.732 kb on - strand at 1950.732 kb on - strand at 1950.815 kb on + strand, within SMc00472 at 1950.914 kb on - strand, within SMc00472 at 1951.128 kb on + strand, within SMc00472 at 1951.129 kb on - strand, within SMc00472 at 1951.253 kb on + strand, within SMc00472 at 1951.253 kb on + strand, within SMc00472 at 1951.253 kb on + strand, within SMc00472 at 1951.253 kb on + strand, within SMc00472 at 1951.254 kb on - strand, within SMc00472 at 1951.408 kb on - strand, within SMc00472 at 1951.442 kb on + strand, within SMc00472 at 1951.442 kb on + strand, within SMc00472 at 1951.443 kb on - strand, within SMc00472 at 1951.443 kb on - strand, within SMc00472 at 1951.771 kb on - strand at 1951.771 kb on - strand at 1951.771 kb on - strand at 1951.771 kb on - strand at 1951.771 kb on - strand at 1951.771 kb on - strand at 1951.771 kb on - strand at 1951.773 kb on - strand at 1951.773 kb on - strand at 1952.034 kb on + strand at 1952.034 kb on + strand at 1952.034 kb on + strand at 1952.034 kb on + strand at 1952.034 kb on + strand at 1952.035 kb on - strand at 1952.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,949,891 + SMc00473 0.31 -0.3 1,949,892 - SMc00473 0.31 -0.5 1,949,892 - SMc00473 0.31 +1.0 1,949,893 + SMc00473 0.31 -0.2 1,949,893 + SMc00473 0.31 -0.0 1,949,893 + SMc00473 0.31 -0.1 1,949,951 + SMc00473 0.37 +0.7 1,949,951 + SMc00473 0.37 +0.3 1,949,952 - SMc00473 0.37 -0.5 1,949,952 - SMc00473 0.37 -2.0 1,950,325 + SMc00473 0.76 -0.4 1,950,603 + -0.6 1,950,732 - -1.1 1,950,732 - +2.2 1,950,815 + SMc00472 0.13 -0.5 1,950,914 - SMc00472 0.23 -0.1 1,951,128 + SMc00472 0.46 -0.2 1,951,129 - SMc00472 0.47 -1.0 1,951,253 + SMc00472 0.60 -0.1 1,951,253 + SMc00472 0.60 -0.1 1,951,253 + SMc00472 0.60 -0.3 1,951,253 + SMc00472 0.60 -0.2 1,951,254 - SMc00472 0.60 +0.2 1,951,408 - SMc00472 0.76 -0.1 1,951,442 + SMc00472 0.80 -0.4 1,951,442 + SMc00472 0.80 -2.3 1,951,443 - SMc00472 0.80 -0.0 1,951,443 - SMc00472 0.80 +0.5 1,951,771 - -0.4 1,951,771 - -1.4 1,951,771 - -0.5 1,951,771 - -0.3 1,951,771 - +0.6 1,951,771 - -0.8 1,951,771 - -0.3 1,951,773 - -0.2 1,951,773 - -0.6 1,952,034 + +0.8 1,952,034 + -0.3 1,952,034 + -1.4 1,952,034 + +0.7 1,952,034 + +0.2 1,952,035 - -0.8 1,952,035 - +0.1
Or see this region's nucleotide sequence