Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00350 and SMc00351 are separated by 175 nucleotides SMc00351 and SMc00352 are separated by 1 nucleotides SMc00352 and SMc00353 are separated by 35 nucleotides
SMc00350: SMc00350 - transport transmembrane protein, at 305,507 to 306,772
SMc00350
SMc00351: SMc00351 - hypothetical protein, at 306,948 to 307,541
SMc00351
SMc00352: SMc00352 - acetyltransferase, at 307,543 to 308,070
SMc00352
SMc00353: SMc00353 - transmembrane protein, at 308,106 to 308,828
SMc00353
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.954 kb on - strand, within SMc00350 at 305.954 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.094 kb on - strand, within SMc00350 at 306.103 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.454 kb on - strand, within SMc00350 at 306.561 kb on - strand, within SMc00350 at 306.681 kb on + strand at 306.732 kb on - strand at 306.732 kb on - strand at 306.908 kb on + strand at 306.909 kb on - strand at 307.252 kb on - strand, within SMc00351 at 307.509 kb on + strand at 307.510 kb on - strand at 307.781 kb on - strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.964 kb on - strand, within SMc00352 at 308.030 kb on - strand at 308.050 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.155 kb on + strand at 308.398 kb on + strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.399 kb on - strand, within SMc00353
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 305,954 - SMc00350 0.35 -0.2 305,954 - SMc00350 0.35 -1.5 306,060 - SMc00350 0.44 -1.8 306,060 - SMc00350 0.44 +0.5 306,094 - SMc00350 0.46 -1.3 306,103 + SMc00350 0.47 +0.8 306,348 + SMc00350 0.66 +0.5 306,348 + SMc00350 0.66 -0.4 306,348 + SMc00350 0.66 +1.4 306,349 - SMc00350 0.67 +0.8 306,349 - SMc00350 0.67 +0.2 306,349 - SMc00350 0.67 +0.4 306,349 - SMc00350 0.67 -0.4 306,357 + SMc00350 0.67 +0.1 306,357 + SMc00350 0.67 -2.0 306,358 - SMc00350 0.67 +0.2 306,358 - SMc00350 0.67 +0.2 306,454 - SMc00350 0.75 -0.8 306,561 - SMc00350 0.83 -0.5 306,681 + +0.2 306,732 - -0.3 306,732 - -0.0 306,908 + +0.3 306,909 - -0.5 307,252 - SMc00351 0.51 -1.2 307,509 + +0.0 307,510 - +0.6 307,781 - SMc00352 0.45 -0.0 307,963 + SMc00352 0.80 -1.4 307,963 + SMc00352 0.80 +0.8 307,964 - SMc00352 0.80 -0.7 308,030 - +1.7 308,050 + -0.8 308,068 + -1.5 308,068 + +0.4 308,068 + -1.5 308,069 - -1.5 308,069 - -0.5 308,069 - +0.8 308,069 - -0.0 308,069 - -0.7 308,155 + -0.4 308,398 + SMc00353 0.40 -1.9 308,399 - SMc00353 0.41 -0.4 308,399 - SMc00353 0.41 -1.3
Or see this region's nucleotide sequence