Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00163 and SMc00162 are separated by 10 nucleotides SMc00162 and SMc00161 are separated by 2 nucleotides SMc00161 and SMc04438 are separated by 211 nucleotides
SMc00163: SMc00163 - transcriptional regulator, at 2,002,291 to 2,003,313
SMc00163
SMc00162: SMc00162 - hypothetical protein, at 2,003,324 to 2,004,151
SMc00162
SMc00161: SMc00161 - NAD synthetase, at 2,004,154 to 2,005,836
SMc00161
SMc04438: SMc04438 - phosphoglycerol transferase, cyclic BETA-1,2-glucan modification protein, at 2,006,048 to 2,007,997
SMc04438
SMc00195: SMc00195 - cyclic BETA-1,2-glucan modification transmembrane protein, at 2,006,105 to 2,008,024
SMc00195
Position (kb)
2004
2005
2006 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2003.283 kb on - strand at 2003.326 kb on - strand at 2003.340 kb on + strand at 2003.345 kb on + strand at 2003.505 kb on + strand, within SMc00162 at 2003.505 kb on + strand, within SMc00162 at 2003.506 kb on - strand, within SMc00162 at 2003.563 kb on - strand, within SMc00162 at 2003.605 kb on + strand, within SMc00162 at 2003.649 kb on + strand, within SMc00162 at 2003.649 kb on + strand, within SMc00162 at 2003.649 kb on + strand, within SMc00162 at 2003.650 kb on - strand, within SMc00162 at 2003.739 kb on - strand, within SMc00162 at 2003.745 kb on + strand, within SMc00162 at 2003.745 kb on + strand, within SMc00162 at 2003.745 kb on + strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.778 kb on + strand, within SMc00162 at 2003.778 kb on + strand, within SMc00162 at 2003.817 kb on + strand, within SMc00162 at 2003.874 kb on + strand, within SMc00162 at 2003.874 kb on + strand, within SMc00162 at 2003.875 kb on - strand, within SMc00162 at 2006.174 kb on + strand at 2006.174 kb on + strand at 2006.699 kb on + strand at 2006.700 kb on - strand at 2006.768 kb on + strand at 2006.769 kb on - strand at 2006.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 2,003,283 - -0.2 2,003,326 - -3.1 2,003,340 + -0.9 2,003,345 + -0.7 2,003,505 + SMc00162 0.22 +0.6 2,003,505 + SMc00162 0.22 +0.3 2,003,506 - SMc00162 0.22 +1.1 2,003,563 - SMc00162 0.29 -0.3 2,003,605 + SMc00162 0.34 -1.5 2,003,649 + SMc00162 0.39 -0.4 2,003,649 + SMc00162 0.39 -0.5 2,003,649 + SMc00162 0.39 +0.3 2,003,650 - SMc00162 0.39 +0.2 2,003,739 - SMc00162 0.50 -1.7 2,003,745 + SMc00162 0.51 -0.8 2,003,745 + SMc00162 0.51 +0.8 2,003,745 + SMc00162 0.51 +0.5 2,003,746 - SMc00162 0.51 +2.7 2,003,746 - SMc00162 0.51 +1.0 2,003,746 - SMc00162 0.51 +0.0 2,003,746 - SMc00162 0.51 -0.3 2,003,746 - SMc00162 0.51 +0.3 2,003,778 + SMc00162 0.55 -0.2 2,003,778 + SMc00162 0.55 -0.6 2,003,817 + SMc00162 0.60 +0.4 2,003,874 + SMc00162 0.66 +1.1 2,003,874 + SMc00162 0.66 +0.1 2,003,875 - SMc00162 0.67 +0.0 2,006,174 + -0.1 2,006,174 + +0.2 2,006,699 + -1.5 2,006,700 - +0.8 2,006,768 + +0.2 2,006,769 - -0.3 2,006,823 + +0.2
Or see this region's nucleotide sequence