Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00157 and SMc00156 are separated by 21 nucleotides SMc00156 and SMc00155 are separated by 135 nucleotides SMc00155 and SMc00154 are separated by 232 nucleotides
SMc00157: SMc00157 - hypothetical protein, at 2,010,950 to 2,011,852
SMc00157
SMc00156: SMc00156 - hypothetical protein, at 2,011,874 to 2,012,269
SMc00156
SMc00155: SMc00155 - DAHP synthetase prtein, at 2,012,405 to 2,013,778
SMc00155
SMc00154: SMc00154 - glutathione reductase, at 2,014,011 to 2,015,402
SMc00154
Position (kb)
2012
2013
2014 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2011.618 kb on - strand, within SMc00157 at 2011.618 kb on - strand, within SMc00157 at 2011.618 kb on - strand, within SMc00157 at 2011.655 kb on + strand, within SMc00157 at 2011.655 kb on + strand, within SMc00157 at 2011.656 kb on - strand, within SMc00157 at 2011.656 kb on - strand, within SMc00157 at 2011.656 kb on - strand, within SMc00157 at 2011.778 kb on + strand at 2011.778 kb on + strand at 2011.778 kb on + strand at 2011.779 kb on - strand at 2011.779 kb on - strand at 2011.823 kb on + strand at 2011.823 kb on + strand at 2011.823 kb on + strand at 2011.824 kb on - strand at 2011.824 kb on - strand at 2011.824 kb on - strand at 2011.920 kb on + strand, within SMc00156 at 2011.920 kb on + strand, within SMc00156 at 2011.920 kb on + strand, within SMc00156 at 2011.920 kb on + strand, within SMc00156 at 2011.921 kb on - strand, within SMc00156 at 2011.921 kb on - strand, within SMc00156 at 2011.923 kb on + strand, within SMc00156 at 2011.924 kb on - strand, within SMc00156 at 2011.924 kb on - strand, within SMc00156 at 2011.924 kb on - strand, within SMc00156 at 2011.988 kb on - strand, within SMc00156 at 2012.007 kb on + strand, within SMc00156 at 2012.008 kb on - strand, within SMc00156 at 2012.008 kb on - strand, within SMc00156 at 2012.155 kb on - strand, within SMc00156 at 2012.261 kb on + strand at 2012.262 kb on - strand at 2012.290 kb on + strand at 2012.291 kb on - strand at 2012.306 kb on + strand at 2012.306 kb on + strand at 2012.307 kb on - strand at 2012.307 kb on - strand at 2012.307 kb on - strand at 2012.307 kb on - strand at 2013.884 kb on + strand at 2013.916 kb on + strand at 2013.937 kb on - strand at 2013.939 kb on - strand at 2013.939 kb on - strand at 2013.970 kb on + strand at 2014.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 2,011,618 - SMc00157 0.74 -0.8 2,011,618 - SMc00157 0.74 -0.1 2,011,618 - SMc00157 0.74 -0.5 2,011,655 + SMc00157 0.78 -0.7 2,011,655 + SMc00157 0.78 +0.2 2,011,656 - SMc00157 0.78 -0.8 2,011,656 - SMc00157 0.78 +0.2 2,011,656 - SMc00157 0.78 +0.0 2,011,778 + -0.1 2,011,778 + +0.2 2,011,778 + +0.3 2,011,779 - +0.2 2,011,779 - +1.8 2,011,823 + +0.8 2,011,823 + -0.1 2,011,823 + +0.2 2,011,824 - -0.9 2,011,824 - +0.9 2,011,824 - -0.3 2,011,920 + SMc00156 0.12 +0.5 2,011,920 + SMc00156 0.12 -0.2 2,011,920 + SMc00156 0.12 -0.0 2,011,920 + SMc00156 0.12 +0.1 2,011,921 - SMc00156 0.12 +1.1 2,011,921 - SMc00156 0.12 -2.0 2,011,923 + SMc00156 0.12 -0.1 2,011,924 - SMc00156 0.13 +0.2 2,011,924 - SMc00156 0.13 +0.8 2,011,924 - SMc00156 0.13 +0.3 2,011,988 - SMc00156 0.29 -1.5 2,012,007 + SMc00156 0.34 +0.0 2,012,008 - SMc00156 0.34 +0.0 2,012,008 - SMc00156 0.34 +0.6 2,012,155 - SMc00156 0.71 +0.2 2,012,261 + -0.2 2,012,262 - +2.0 2,012,290 + -0.6 2,012,291 - -0.3 2,012,306 + +0.8 2,012,306 + +0.7 2,012,307 - +1.6 2,012,307 - -1.4 2,012,307 - +0.0 2,012,307 - +1.1 2,013,884 + +2.9 2,013,916 + +2.0 2,013,937 - +0.0 2,013,939 - -0.2 2,013,939 - +0.0 2,013,970 + +0.3 2,014,055 - -3.2
Or see this region's nucleotide sequence