Strain Fitness in Sinorhizobium meliloti 1021 around SMc00092

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00091 and SMc00092 are separated by 47 nucleotidesSMc00092 and SMc00030 are separated by 279 nucleotidesSMc00030 and SMc00031 overlap by 1 nucleotides SMc00091: SMc00091 - sulfate adenylyltransferase, at 1,036,348 to 1,037,301 SMc00091 SMc00092: SMc00092 - phosphoadenosine phosphosulfate reductase, at 1,037,349 to 1,038,146 SMc00092 SMc00030: SMc00030 - hypothetical protein, at 1,038,426 to 1,038,812 SMc00030 SMc00031: SMc00031 - hypothetical protein, at 1,038,812 to 1,039,291 SMc00031 Position (kb) 1037 1038 1039Strain fitness (log2 ratio) -2 -1 0 1 2at 1036.606 kb on + strand, within SMc00091at 1036.632 kb on - strand, within SMc00091at 1036.650 kb on + strand, within SMc00091at 1036.667 kb on + strand, within SMc00091at 1036.668 kb on - strand, within SMc00091at 1036.743 kb on + strand, within SMc00091at 1036.745 kb on + strand, within SMc00091at 1036.746 kb on - strand, within SMc00091at 1036.811 kb on + strand, within SMc00091at 1036.811 kb on + strand, within SMc00091at 1036.811 kb on + strand, within SMc00091at 1036.811 kb on + strand, within SMc00091at 1036.812 kb on - strand, within SMc00091at 1036.927 kb on - strand, within SMc00091at 1036.928 kb on + strand, within SMc00091at 1036.929 kb on - strand, within SMc00091at 1036.929 kb on - strand, within SMc00091at 1036.929 kb on - strand, within SMc00091at 1036.929 kb on - strand, within SMc00091at 1037.010 kb on - strand, within SMc00091at 1037.010 kb on - strand, within SMc00091at 1037.103 kb on - strand, within SMc00091at 1037.103 kb on - strand, within SMc00091at 1037.156 kb on + strand, within SMc00091at 1037.156 kb on + strand, within SMc00091at 1037.292 kb on + strandat 1037.689 kb on + strand, within SMc00092at 1037.770 kb on + strand, within SMc00092at 1037.789 kb on - strand, within SMc00092at 1037.789 kb on - strand, within SMc00092at 1037.800 kb on + strand, within SMc00092at 1037.800 kb on + strand, within SMc00092at 1037.800 kb on + strand, within SMc00092at 1037.800 kb on + strand, within SMc00092at 1037.828 kb on - strand, within SMc00092at 1037.830 kb on + strand, within SMc00092at 1037.830 kb on + strand, within SMc00092at 1037.831 kb on - strand, within SMc00092at 1037.831 kb on - strand, within SMc00092at 1037.851 kb on + strand, within SMc00092at 1037.851 kb on + strand, within SMc00092at 1037.851 kb on + strand, within SMc00092at 1037.852 kb on - strand, within SMc00092at 1037.957 kb on + strand, within SMc00092at 1037.991 kb on - strand, within SMc00092at 1038.240 kb on + strandat 1038.241 kb on - strandat 1038.256 kb on - strandat 1038.273 kb on + strandat 1038.274 kb on - strandat 1038.276 kb on + strandat 1038.289 kb on + strandat 1038.496 kb on - strand, within SMc00030at 1038.553 kb on + strand, within SMc00030at 1038.554 kb on - strand, within SMc00030at 1038.777 kb on + strandat 1038.778 kb on - strandat 1038.786 kb on + strandat 1038.787 kb on - strandat 1038.881 kb on + strand, within SMc00031at 1038.881 kb on + strand, within SMc00031at 1038.882 kb on - strand, within SMc00031at 1038.906 kb on + strand, within SMc00031at 1038.907 kb on - strand, within SMc00031at 1038.907 kb on - strand, within SMc00031at 1038.907 kb on - strand, within SMc00031at 1038.907 kb on - strand, within SMc00031at 1039.002 kb on - strand, within SMc00031at 1039.012 kb on + strand, within SMc00031at 1039.012 kb on + strand, within SMc00031at 1039.013 kb on - strand, within SMc00031at 1039.029 kb on + strand, within SMc00031at 1039.082 kb on + strand, within SMc00031at 1039.083 kb on - strand, within SMc00031at 1039.083 kb on - strand, within SMc00031

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,036,606 + SMc00091 0.27 -0.4
1,036,632 - SMc00091 0.30 +1.9
1,036,650 + SMc00091 0.32 +0.5
1,036,667 + SMc00091 0.33 -0.4
1,036,668 - SMc00091 0.34 +1.2
1,036,743 + SMc00091 0.41 +0.1
1,036,745 + SMc00091 0.42 -0.1
1,036,746 - SMc00091 0.42 -0.4
1,036,811 + SMc00091 0.49 +0.6
1,036,811 + SMc00091 0.49 -2.4
1,036,811 + SMc00091 0.49 +0.8
1,036,811 + SMc00091 0.49 -0.2
1,036,812 - SMc00091 0.49 -0.1
1,036,927 - SMc00091 0.61 -0.2
1,036,928 + SMc00091 0.61 -0.4
1,036,929 - SMc00091 0.61 +0.9
1,036,929 - SMc00091 0.61 +0.2
1,036,929 - SMc00091 0.61 -0.1
1,036,929 - SMc00091 0.61 -1.3
1,037,010 - SMc00091 0.69 -2.0
1,037,010 - SMc00091 0.69 +0.4
1,037,103 - SMc00091 0.79 +1.2
1,037,103 - SMc00091 0.79 +0.5
1,037,156 + SMc00091 0.85 -0.9
1,037,156 + SMc00091 0.85 -0.1
1,037,292 + -2.5
1,037,689 + SMc00092 0.43 -0.2
1,037,770 + SMc00092 0.53 -1.2
1,037,789 - SMc00092 0.55 -2.6
1,037,789 - SMc00092 0.55 -0.6
1,037,800 + SMc00092 0.57 +1.1
1,037,800 + SMc00092 0.57 -0.3
1,037,800 + SMc00092 0.57 -1.0
1,037,800 + SMc00092 0.57 -0.2
1,037,828 - SMc00092 0.60 -1.2
1,037,830 + SMc00092 0.60 +1.7
1,037,830 + SMc00092 0.60 -0.3
1,037,831 - SMc00092 0.60 +0.1
1,037,831 - SMc00092 0.60 -0.8
1,037,851 + SMc00092 0.63 +0.6
1,037,851 + SMc00092 0.63 -0.3
1,037,851 + SMc00092 0.63 -0.2
1,037,852 - SMc00092 0.63 -0.9
1,037,957 + SMc00092 0.76 -0.5
1,037,991 - SMc00092 0.80 -0.3
1,038,240 + +0.0
1,038,241 - -1.1
1,038,256 - +0.7
1,038,273 + +0.7
1,038,274 - +0.5
1,038,276 + +1.2
1,038,289 + -0.3
1,038,496 - SMc00030 0.18 -2.6
1,038,553 + SMc00030 0.33 -0.5
1,038,554 - SMc00030 0.33 +0.2
1,038,777 + +0.6
1,038,778 - +0.7
1,038,786 + -1.5
1,038,787 - -1.4
1,038,881 + SMc00031 0.14 +0.5
1,038,881 + SMc00031 0.14 +0.2
1,038,882 - SMc00031 0.15 +0.1
1,038,906 + SMc00031 0.20 +1.2
1,038,907 - SMc00031 0.20 +0.2
1,038,907 - SMc00031 0.20 +0.4
1,038,907 - SMc00031 0.20 -0.4
1,038,907 - SMc00031 0.20 -1.1
1,039,002 - SMc00031 0.40 +1.8
1,039,012 + SMc00031 0.42 -0.1
1,039,012 + SMc00031 0.42 -0.3
1,039,013 - SMc00031 0.42 -0.5
1,039,029 + SMc00031 0.45 +0.2
1,039,082 + SMc00031 0.56 -0.3
1,039,083 - SMc00031 0.56 +0.3
1,039,083 - SMc00031 0.56 -1.8

Or see this region's nucleotide sequence