Strain Fitness in Sinorhizobium meliloti 1021 around SMc00077

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00451 and SMc00077 are separated by 18 nucleotidesSMc00077 and SMc00020 are separated by 348 nucleotides SMc00451: SMc00451 - processing protease, at 1,007,719 to 1,009,017 SMc00451 SMc00077: SMc00077 - threonine synthase, at 1,009,036 to 1,010,436 SMc00077 SMc00020: SMc00020 - hypothetical protein, at 1,010,785 to 1,011,330 SMc00020 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -3 -2 -1 0 1at 1008.254 kb on + strand, within SMc00451at 1008.254 kb on + strand, within SMc00451at 1008.255 kb on - strand, within SMc00451at 1008.477 kb on + strand, within SMc00451at 1008.478 kb on - strand, within SMc00451at 1008.478 kb on - strand, within SMc00451at 1008.480 kb on - strand, within SMc00451at 1008.480 kb on - strand, within SMc00451at 1008.576 kb on - strand, within SMc00451at 1008.755 kb on + strand, within SMc00451at 1008.758 kb on + strand, within SMc00451at 1008.758 kb on + strand, within SMc00451at 1008.758 kb on + strand, within SMc00451at 1008.759 kb on - strand, within SMc00451at 1009.054 kb on - strandat 1010.610 kb on + strandat 1010.610 kb on + strandat 1011.316 kb on + strandat 1011.328 kb on + strandat 1011.329 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
1,008,254 + SMc00451 0.41 -0.7
1,008,254 + SMc00451 0.41 -0.0
1,008,255 - SMc00451 0.41 -0.4
1,008,477 + SMc00451 0.58 -1.1
1,008,478 - SMc00451 0.58 -1.6
1,008,478 - SMc00451 0.58 -1.0
1,008,480 - SMc00451 0.59 -2.9
1,008,480 - SMc00451 0.59 -0.8
1,008,576 - SMc00451 0.66 -0.1
1,008,755 + SMc00451 0.80 -3.4
1,008,758 + SMc00451 0.80 -3.0
1,008,758 + SMc00451 0.80 -1.5
1,008,758 + SMc00451 0.80 -0.6
1,008,759 - SMc00451 0.80 -0.5
1,009,054 - +0.2
1,010,610 + -2.9
1,010,610 + -0.7
1,011,316 + -2.1
1,011,328 + -0.4
1,011,329 - -0.6

Or see this region's nucleotide sequence