Strain Fitness in Sinorhizobium meliloti 1021 around SMc00068

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00960 and SMc00068 are separated by 141 nucleotidesSMc00068 and SMc00001 are separated by 210 nucleotides SMc00960: SMc00960 - hypothetical protein, at 979,731 to 981,146 SMc00960 SMc00068: SMc00068 - hypothetical protein, at 981,288 to 982,517 SMc00068 SMc00001: SMc00001 - hypothetical protein, at 982,728 to 983,786 SMc00001 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 980.350 kb on + strand, within SMc00960at 980.656 kb on - strand, within SMc00960at 980.692 kb on - strand, within SMc00960at 980.692 kb on - strand, within SMc00960at 980.693 kb on + strand, within SMc00960at 980.693 kb on + strand, within SMc00960at 980.694 kb on - strand, within SMc00960at 980.694 kb on - strand, within SMc00960at 980.720 kb on - strand, within SMc00960at 980.720 kb on - strand, within SMc00960at 980.760 kb on + strand, within SMc00960at 980.760 kb on + strand, within SMc00960at 980.796 kb on + strand, within SMc00960at 980.796 kb on + strand, within SMc00960at 980.796 kb on + strand, within SMc00960at 980.797 kb on - strand, within SMc00960at 980.797 kb on - strand, within SMc00960at 980.797 kb on - strandat 980.797 kb on - strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 981.319 kb on + strandat 981.320 kb on - strandat 981.387 kb on + strandat 981.388 kb on - strandat 981.394 kb on + strandat 981.395 kb on - strandat 981.548 kb on + strand, within SMc00068at 981.643 kb on + strand, within SMc00068at 981.644 kb on - strand, within SMc00068at 981.884 kb on + strand, within SMc00068at 981.885 kb on - strand, within SMc00068at 981.901 kb on + strand, within SMc00068at 981.976 kb on + strand, within SMc00068at 981.988 kb on + strand, within SMc00068at 981.988 kb on + strand, within SMc00068at 981.989 kb on - strand, within SMc00068at 982.204 kb on + strand, within SMc00068at 982.204 kb on + strandat 982.205 kb on - strand, within SMc00068at 982.342 kb on + strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.497 kb on - strandat 982.587 kb on - strandat 982.668 kb on - strandat 983.058 kb on + strand, within SMc00001at 983.066 kb on + strand, within SMc00001at 983.137 kb on - strand, within SMc00001at 983.236 kb on + strand, within SMc00001at 983.237 kb on - strand, within SMc00001at 983.290 kb on - strand, within SMc00001at 983.333 kb on + strand, within SMc00001at 983.334 kb on - strand, within SMc00001

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
980,350 + SMc00960 0.44 +0.3
980,656 - SMc00960 0.65 +0.4
980,692 - SMc00960 0.68 -0.4
980,692 - SMc00960 0.68 -0.1
980,693 + SMc00960 0.68 +0.3
980,693 + SMc00960 0.68 -1.0
980,694 - SMc00960 0.68 +0.3
980,694 - SMc00960 0.68 +0.1
980,720 - SMc00960 0.70 -1.3
980,720 - SMc00960 0.70 +1.1
980,760 + SMc00960 0.73 +0.6
980,760 + SMc00960 0.73 +1.5
980,796 + SMc00960 0.75 -1.0
980,796 + SMc00960 0.75 -0.7
980,796 + SMc00960 0.75 +0.1
980,797 - SMc00960 0.75 +0.6
980,797 - SMc00960 0.75 +2.2
980,797 - +3.8
980,797 - SMc00960 0.75 -0.1
980,856 + SMc00960 0.79 -0.0
980,856 + SMc00960 0.79 -1.6
980,856 + SMc00960 0.79 -0.2
980,856 + SMc00960 0.79 +0.2
980,856 + SMc00960 0.79 +1.0
980,856 + SMc00960 0.79 -0.3
980,856 + SMc00960 0.79 +0.8
980,856 + SMc00960 0.79 +0.3
980,857 - SMc00960 0.80 +0.6
980,857 - SMc00960 0.80 -0.3
980,857 - SMc00960 0.80 +0.2
980,857 - SMc00960 0.80 -0.7
980,857 - SMc00960 0.80 -0.1
980,857 - SMc00960 0.80 +0.0
980,857 - SMc00960 0.80 -0.6
981,319 + -0.3
981,320 - +1.6
981,387 + -0.5
981,388 - -0.8
981,394 + -1.1
981,395 - +1.0
981,548 + SMc00068 0.21 -1.1
981,643 + SMc00068 0.29 +0.7
981,644 - SMc00068 0.29 -0.9
981,884 + SMc00068 0.48 +0.2
981,885 - SMc00068 0.49 +0.4
981,901 + SMc00068 0.50 +0.9
981,976 + SMc00068 0.56 -0.1
981,988 + SMc00068 0.57 +0.7
981,988 + SMc00068 0.57 -0.2
981,989 - SMc00068 0.57 +0.4
982,204 + SMc00068 0.74 +1.1
982,204 + +2.2
982,205 - SMc00068 0.75 +0.4
982,342 + SMc00068 0.86 -0.5
982,343 - SMc00068 0.86 -0.8
982,343 - SMc00068 0.86 -1.8
982,343 - SMc00068 0.86 -1.1
982,343 - SMc00068 0.86 +0.2
982,343 - SMc00068 0.86 +0.4
982,343 - SMc00068 0.86 +1.9
982,497 - -0.0
982,587 - -1.1
982,668 - -1.5
983,058 + SMc00001 0.31 +0.4
983,066 + SMc00001 0.32 +0.2
983,137 - SMc00001 0.39 -0.5
983,236 + SMc00001 0.48 -0.8
983,237 - SMc00001 0.48 -0.4
983,290 - SMc00001 0.53 +0.1
983,333 + SMc00001 0.57 -0.1
983,334 - SMc00001 0.57 -0.3

Or see this region's nucleotide sequence