Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1662 and SMa1664 overlap by 4 nucleotides SMa1664 and SMa1666 are separated by 336 nucleotides
SMa1662: SMa1662 - Cation/multidrug efflux pump, at 927,892 to 931,026
SMa1662
SMa1664: SMa1664 - HlyD-family protein, at 931,023 to 932,189
SMa1664
SMa1666: SMa1666 - hypothetical protein, at 932,526 to 933,005
SMa1666
Position (kb)
931
932
933 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 930.244 kb on + strand, within SMa1662 at 930.245 kb on - strand, within SMa1662 at 930.245 kb on - strand, within SMa1662 at 930.276 kb on + strand, within SMa1662 at 930.433 kb on + strand, within SMa1662 at 930.465 kb on + strand, within SMa1662 at 930.466 kb on - strand, within SMa1662 at 930.476 kb on + strand, within SMa1662 at 930.551 kb on + strand, within SMa1662 at 930.552 kb on - strand, within SMa1662 at 930.566 kb on - strand, within SMa1662 at 930.566 kb on - strand, within SMa1662 at 930.593 kb on + strand, within SMa1662 at 930.758 kb on + strand at 930.758 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.875 kb on + strand at 930.876 kb on - strand at 931.240 kb on - strand, within SMa1664 at 931.371 kb on - strand, within SMa1664 at 931.454 kb on - strand, within SMa1664 at 931.645 kb on + strand, within SMa1664 at 931.694 kb on - strand, within SMa1664 at 931.907 kb on - strand, within SMa1664 at 931.907 kb on - strand, within SMa1664 at 932.058 kb on + strand, within SMa1664 at 932.058 kb on + strand, within SMa1664 at 932.058 kb on + strand, within SMa1664 at 932.333 kb on + strand at 932.334 kb on - strand at 932.334 kb on - strand at 932.334 kb on - strand at 932.370 kb on - strand at 932.382 kb on + strand at 932.383 kb on - strand at 932.383 kb on - strand at 932.747 kb on + strand, within SMa1666 at 932.811 kb on + strand, within SMa1666 at 932.811 kb on + strand, within SMa1666 at 932.812 kb on - strand, within SMa1666 at 932.812 kb on - strand, within SMa1666 at 932.988 kb on + strand at 932.989 kb on - strand at 933.102 kb on + strand at 933.103 kb on - strand at 933.154 kb on + strand at 933.154 kb on + strand at 933.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 930,244 + SMa1662 0.75 -0.4 930,245 - SMa1662 0.75 +0.0 930,245 - SMa1662 0.75 -0.6 930,276 + SMa1662 0.76 -1.6 930,433 + SMa1662 0.81 -0.2 930,465 + SMa1662 0.82 +0.2 930,466 - SMa1662 0.82 -1.0 930,476 + SMa1662 0.82 -0.1 930,551 + SMa1662 0.85 -0.2 930,552 - SMa1662 0.85 +0.3 930,566 - SMa1662 0.85 +0.7 930,566 - SMa1662 0.85 +0.3 930,593 + SMa1662 0.86 -1.8 930,758 + +0.7 930,758 + -0.0 930,791 + -0.1 930,791 + +0.8 930,791 + +0.1 930,791 + -1.6 930,791 + +0.1 930,791 + +0.0 930,792 - -1.0 930,792 - +0.3 930,792 - -1.5 930,792 - +1.6 930,875 + -0.2 930,876 - +0.6 931,240 - SMa1664 0.19 -0.2 931,371 - SMa1664 0.30 -0.8 931,454 - SMa1664 0.37 -0.3 931,645 + SMa1664 0.53 -0.8 931,694 - SMa1664 0.57 -1.0 931,907 - SMa1664 0.76 -0.7 931,907 - SMa1664 0.76 -2.0 932,058 + SMa1664 0.89 -0.5 932,058 + SMa1664 0.89 +0.1 932,058 + SMa1664 0.89 -0.2 932,333 + -0.9 932,334 - +0.7 932,334 - +0.3 932,334 - -0.2 932,370 - +2.3 932,382 + +0.9 932,383 - -0.1 932,383 - +1.3 932,747 + SMa1666 0.46 -1.7 932,811 + SMa1666 0.59 -0.6 932,811 + SMa1666 0.59 -0.7 932,812 - SMa1666 0.60 -0.3 932,812 - SMa1666 0.60 +0.4 932,988 + -1.8 932,989 - -0.1 933,102 + +0.2 933,103 - -0.6 933,154 + -0.1 933,154 + +0.9 933,155 - -0.2
Or see this region's nucleotide sequence