Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1579 and SMa1580 are separated by 112 nucleotides SMa1580 and SMa1582 are separated by 98 nucleotides
SMa1579: SMa1579 - hypothetical protein, at 873,203 to 874,498
SMa1579
SMa1580: SMa1580 - hypothetical protein, at 874,611 to 875,123
SMa1580
SMa1582: SMa1582 - hypothetical protein, at 875,222 to 876,520
SMa1582
Position (kb) 874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 873.738 kb on + strand, within SMa1579 at 873.739 kb on - strand, within SMa1579 at 873.739 kb on - strand, within SMa1579 at 873.769 kb on + strand, within SMa1579 at 873.769 kb on + strand, within SMa1579 at 873.984 kb on - strand, within SMa1579 at 874.001 kb on + strand, within SMa1579 at 874.081 kb on - strand, within SMa1579 at 874.094 kb on + strand, within SMa1579 at 874.094 kb on + strand, within SMa1579 at 874.095 kb on - strand, within SMa1579 at 874.095 kb on - strand, within SMa1579 at 874.095 kb on - strand, within SMa1579 at 874.096 kb on + strand, within SMa1579 at 874.096 kb on + strand, within SMa1579 at 874.097 kb on - strand, within SMa1579 at 874.097 kb on - strand, within SMa1579 at 874.101 kb on + strand, within SMa1579 at 874.101 kb on + strand, within SMa1579 at 874.102 kb on - strand, within SMa1579 at 874.157 kb on - strand, within SMa1579 at 874.286 kb on + strand, within SMa1579 at 874.293 kb on + strand, within SMa1579 at 874.293 kb on + strand, within SMa1579 at 874.293 kb on + strand, within SMa1579 at 874.332 kb on - strand, within SMa1579 at 874.387 kb on + strand at 874.544 kb on + strand at 874.544 kb on + strand at 874.700 kb on + strand, within SMa1580 at 874.881 kb on - strand, within SMa1580 at 875.130 kb on + strand at 875.130 kb on + strand at 875.130 kb on + strand at 875.130 kb on + strand at 875.130 kb on + strand at 875.130 kb on + strand at 875.131 kb on - strand at 875.131 kb on - strand at 875.131 kb on - strand at 875.322 kb on - strand at 875.322 kb on - strand at 875.445 kb on + strand, within SMa1582 at 875.553 kb on + strand, within SMa1582 at 875.553 kb on + strand, within SMa1582 at 875.554 kb on - strand, within SMa1582 at 875.616 kb on + strand, within SMa1582 at 875.638 kb on + strand, within SMa1582 at 875.638 kb on + strand, within SMa1582 at 875.639 kb on - strand, within SMa1582 at 875.696 kb on - strand, within SMa1582 at 875.852 kb on + strand, within SMa1582 at 875.852 kb on + strand, within SMa1582 at 875.852 kb on + strand, within SMa1582 at 875.852 kb on + strand, within SMa1582 at 875.853 kb on - strand, within SMa1582 at 875.873 kb on + strand, within SMa1582 at 875.983 kb on + strand, within SMa1582 at 876.080 kb on - strand, within SMa1582 at 876.080 kb on - strand, within SMa1582 at 876.080 kb on - strand, within SMa1582 at 876.105 kb on - strand, within SMa1582
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 873,738 + SMa1579 0.41 -0.3 873,739 - SMa1579 0.41 +0.3 873,739 - SMa1579 0.41 +0.1 873,769 + SMa1579 0.44 +0.2 873,769 + SMa1579 0.44 -0.3 873,984 - SMa1579 0.60 -0.4 874,001 + SMa1579 0.62 +0.3 874,081 - SMa1579 0.68 +0.1 874,094 + SMa1579 0.69 +0.5 874,094 + SMa1579 0.69 -1.8 874,095 - SMa1579 0.69 -0.3 874,095 - SMa1579 0.69 -0.8 874,095 - SMa1579 0.69 -1.5 874,096 + SMa1579 0.69 -0.7 874,096 + SMa1579 0.69 +2.9 874,097 - SMa1579 0.69 -0.4 874,097 - SMa1579 0.69 -0.2 874,101 + SMa1579 0.69 +0.7 874,101 + SMa1579 0.69 +0.6 874,102 - SMa1579 0.69 +0.0 874,157 - SMa1579 0.74 +0.1 874,286 + SMa1579 0.84 -0.1 874,293 + SMa1579 0.84 +0.0 874,293 + SMa1579 0.84 +0.3 874,293 + SMa1579 0.84 -0.4 874,332 - SMa1579 0.87 -1.3 874,387 + +0.8 874,544 + +0.2 874,544 + -0.8 874,700 + SMa1580 0.17 -1.1 874,881 - SMa1580 0.53 -1.1 875,130 + +0.4 875,130 + -0.2 875,130 + +0.3 875,130 + +0.1 875,130 + -0.1 875,130 + +0.1 875,131 - -0.0 875,131 - +0.2 875,131 - +0.4 875,322 - -0.3 875,322 - -1.8 875,445 + SMa1582 0.17 -1.4 875,553 + SMa1582 0.25 +0.3 875,553 + SMa1582 0.25 +0.1 875,554 - SMa1582 0.26 +1.2 875,616 + SMa1582 0.30 +1.0 875,638 + SMa1582 0.32 -0.9 875,638 + SMa1582 0.32 +0.9 875,639 - SMa1582 0.32 +0.3 875,696 - SMa1582 0.36 -0.1 875,852 + SMa1582 0.48 +0.2 875,852 + SMa1582 0.48 -1.9 875,852 + SMa1582 0.48 +1.4 875,852 + SMa1582 0.48 -1.9 875,853 - SMa1582 0.49 +0.2 875,873 + SMa1582 0.50 -1.5 875,983 + SMa1582 0.59 +0.6 876,080 - SMa1582 0.66 +0.6 876,080 - SMa1582 0.66 +0.2 876,080 - SMa1582 0.66 +0.7 876,105 - SMa1582 0.68 +0.3
Or see this region's nucleotide sequence