Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1311 and SMa1313 are separated by 229 nucleotides SMa1313 and SMa1315 overlap by 1 nucleotides
SMa1311: SMa1311 - VirB6 type IV secretion protein, at 715,261 to 716,202
SMa1311
SMa1313: SMa1313 - VirB5 type IV secretion protein, at 716,432 to 717,133
SMa1313
SMa1315: SMa1315 - VirB4 type IV secretion protein, at 717,133 to 719,511
SMa1315
Position (kb) 716
717
718 Strain fitness (log2 ratio) -2
-1
0
1
2 at 715.445 kb on + strand, within SMa1311 at 715.445 kb on + strand, within SMa1311 at 715.446 kb on - strand, within SMa1311 at 715.446 kb on - strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.510 kb on - strand, within SMa1311 at 715.510 kb on - strand, within SMa1311 at 715.556 kb on - strand, within SMa1311 at 715.722 kb on + strand, within SMa1311 at 715.722 kb on + strand, within SMa1311 at 715.725 kb on - strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.944 kb on - strand, within SMa1311 at 715.944 kb on - strand, within SMa1311 at 716.061 kb on - strand, within SMa1311 at 716.061 kb on - strand, within SMa1311 at 716.072 kb on + strand, within SMa1311 at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.193 kb on - strand at 716.193 kb on - strand at 716.193 kb on - strand at 716.365 kb on + strand at 716.366 kb on - strand at 716.366 kb on - strand at 716.402 kb on + strand at 716.402 kb on + strand at 716.547 kb on - strand, within SMa1313 at 716.679 kb on + strand, within SMa1313 at 716.745 kb on + strand, within SMa1313 at 716.745 kb on + strand, within SMa1313 at 716.773 kb on - strand, within SMa1313 at 716.779 kb on + strand, within SMa1313 at 716.779 kb on + strand, within SMa1313 at 716.780 kb on - strand, within SMa1313 at 717.116 kb on - strand at 717.116 kb on - strand at 717.298 kb on - strand at 717.392 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.654 kb on - strand, within SMa1315 at 717.708 kb on - strand, within SMa1315 at 718.007 kb on - strand, within SMa1315 at 718.064 kb on + strand, within SMa1315 at 718.064 kb on + strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.088 kb on + strand, within SMa1315 at 718.111 kb on - strand, within SMa1315
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 715,445 + SMa1311 0.20 +0.5 715,445 + SMa1311 0.20 -2.2 715,446 - SMa1311 0.20 +0.6 715,446 - SMa1311 0.20 -1.3 715,454 + SMa1311 0.20 +0.4 715,454 + SMa1311 0.20 +0.4 715,454 + SMa1311 0.20 -0.2 715,454 + SMa1311 0.20 +0.3 715,454 + SMa1311 0.20 -1.5 715,455 - SMa1311 0.21 -0.3 715,455 - SMa1311 0.21 -0.2 715,455 - SMa1311 0.21 +0.2 715,509 + SMa1311 0.26 +0.8 715,509 + SMa1311 0.26 -0.0 715,509 + SMa1311 0.26 -0.2 715,510 - SMa1311 0.26 +0.5 715,510 - SMa1311 0.26 +0.4 715,556 - SMa1311 0.31 -0.3 715,722 + SMa1311 0.49 -0.2 715,722 + SMa1311 0.49 +0.6 715,725 - SMa1311 0.49 -0.4 715,943 + SMa1311 0.72 +0.6 715,943 + SMa1311 0.72 -0.1 715,943 + SMa1311 0.72 +0.2 715,944 - SMa1311 0.73 +0.2 715,944 - SMa1311 0.73 -1.6 716,061 - SMa1311 0.85 +0.7 716,061 - SMa1311 0.85 +0.6 716,072 + SMa1311 0.86 +1.0 716,192 + -0.1 716,192 + +0.6 716,192 + +1.6 716,192 + +0.2 716,193 - +1.0 716,193 - -0.3 716,193 - +0.6 716,365 + -0.4 716,366 - +1.2 716,366 - -1.2 716,402 + -0.4 716,402 + -0.4 716,547 - SMa1313 0.16 +1.4 716,679 + SMa1313 0.35 -0.4 716,745 + SMa1313 0.45 +0.5 716,745 + SMa1313 0.45 +0.8 716,773 - SMa1313 0.49 +0.7 716,779 + SMa1313 0.49 +0.3 716,779 + SMa1313 0.49 -0.0 716,780 - SMa1313 0.50 +1.4 717,116 - +0.8 717,116 - -0.8 717,298 - -0.5 717,392 + SMa1315 0.11 -0.3 717,653 + SMa1315 0.22 -0.4 717,653 + SMa1315 0.22 -0.3 717,653 + SMa1315 0.22 +1.0 717,653 + SMa1315 0.22 -0.0 717,654 - SMa1315 0.22 -0.1 717,708 - SMa1315 0.24 -0.0 718,007 - SMa1315 0.37 +0.1 718,064 + SMa1315 0.39 -1.1 718,064 + SMa1315 0.39 +2.2 718,065 - SMa1315 0.39 -1.4 718,065 - SMa1315 0.39 -0.4 718,065 - SMa1315 0.39 +0.6 718,088 + SMa1315 0.40 +0.3 718,111 - SMa1315 0.41 +0.3
Or see this region's nucleotide sequence