Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0939 and SMa0940 are separated by 4 nucleotides SMa0940 and SMa0941 are separated by 120 nucleotides SMa0941 and SMa0943 are separated by 231 nucleotides
SMa0939: SMa0939 - sensor histidine kinase of two-component system, at 523,213 to 525,114
SMa0939
SMa0940: SMa0940 - Response regulator, at 525,119 to 525,733
SMa0940
SMa0941: SMa0941 - hypothetical protein, at 525,854 to 526,237
SMa0941
SMa0943: SMa0943 - arylsulfatase, at 526,469 to 528,106
SMa0943
Position (kb) 525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 524.176 kb on + strand, within SMa0939 at 524.177 kb on - strand, within SMa0939 at 524.177 kb on - strand, within SMa0939 at 524.246 kb on + strand, within SMa0939 at 524.279 kb on - strand, within SMa0939 at 524.294 kb on + strand, within SMa0939 at 525.213 kb on - strand, within SMa0940 at 525.213 kb on - strand, within SMa0940 at 525.380 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.613 kb on + strand, within SMa0940 at 525.614 kb on - strand, within SMa0940 at 525.776 kb on - strand at 525.850 kb on + strand at 525.850 kb on + strand at 525.916 kb on - strand, within SMa0941 at 525.916 kb on - strand, within SMa0941 at 525.956 kb on + strand, within SMa0941 at 525.957 kb on - strand, within SMa0941 at 525.989 kb on - strand, within SMa0941 at 526.109 kb on - strand, within SMa0941 at 526.285 kb on + strand at 526.286 kb on - strand at 526.286 kb on - strand at 526.303 kb on + strand at 526.477 kb on + strand at 526.477 kb on + strand at 526.477 kb on + strand at 526.612 kb on + strand at 526.614 kb on + strand at 526.614 kb on + strand at 526.614 kb on + strand at 526.615 kb on - strand at 526.661 kb on + strand, within SMa0943
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 524,176 + SMa0939 0.51 -1.1 524,177 - SMa0939 0.51 -1.1 524,177 - SMa0939 0.51 -0.6 524,246 + SMa0939 0.54 -0.4 524,279 - SMa0939 0.56 -0.1 524,294 + SMa0939 0.57 +0.2 525,213 - SMa0940 0.15 -3.2 525,213 - SMa0940 0.15 -0.7 525,380 - SMa0940 0.42 -0.1 525,521 - SMa0940 0.65 -0.6 525,521 - SMa0940 0.65 -0.6 525,521 - SMa0940 0.65 +2.2 525,613 + SMa0940 0.80 +0.4 525,614 - SMa0940 0.80 -0.3 525,776 - -1.1 525,850 + -1.4 525,850 + -1.0 525,916 - SMa0941 0.16 -0.3 525,916 - SMa0941 0.16 +0.1 525,956 + SMa0941 0.27 -0.6 525,957 - SMa0941 0.27 +0.3 525,989 - SMa0941 0.35 +0.2 526,109 - SMa0941 0.66 -0.6 526,285 + -1.2 526,286 - -0.2 526,286 - +0.4 526,303 + +0.9 526,477 + -0.3 526,477 + -0.8 526,477 + -1.1 526,612 + -0.4 526,614 + +0.6 526,614 + -0.1 526,614 + -0.3 526,615 - -0.3 526,661 + SMa0943 0.12 +1.4
Or see this region's nucleotide sequence