Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0699 and SMa0702 are separated by 405 nucleotides SMa0702 and SMa0705 are separated by 482 nucleotides
SMa0699: SMa0699 - hypothetical protein, at 379,173 to 379,643
SMa0699
SMa0702: SMa0702 - hypothetical protein, at 380,049 to 380,483
SMa0702
SMa0705: SMa0705 - DgoK2 2-dehydro-3-deoxygalactonokinase, at 380,966 to 381,907
SMa0705
Position (kb) 380
381 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 379.117 kb on + strand at 379.121 kb on + strand at 379.122 kb on - strand at 379.122 kb on - strand at 379.122 kb on - strand at 379.191 kb on - strand at 379.191 kb on - strand at 379.191 kb on - strand at 379.191 kb on - strand at 379.232 kb on + strand, within SMa0699 at 379.233 kb on - strand, within SMa0699 at 379.233 kb on - strand, within SMa0699 at 379.291 kb on + strand, within SMa0699 at 379.325 kb on - strand, within SMa0699 at 379.325 kb on - strand, within SMa0699 at 379.325 kb on - strand, within SMa0699 at 379.419 kb on + strand, within SMa0699 at 379.462 kb on + strand, within SMa0699 at 379.568 kb on + strand, within SMa0699 at 379.568 kb on + strand, within SMa0699 at 379.569 kb on - strand, within SMa0699 at 379.569 kb on - strand, within SMa0699 at 379.569 kb on - strand, within SMa0699 at 379.667 kb on + strand at 379.730 kb on + strand at 379.922 kb on + strand at 379.922 kb on + strand at 379.923 kb on - strand at 379.923 kb on - strand at 379.923 kb on - strand at 379.969 kb on + strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 380.002 kb on - strand at 380.065 kb on + strand at 380.065 kb on + strand at 380.065 kb on + strand at 380.223 kb on + strand, within SMa0702 at 380.271 kb on + strand, within SMa0702 at 380.271 kb on + strand, within SMa0702 at 380.272 kb on - strand, within SMa0702 at 380.274 kb on + strand, within SMa0702 at 380.274 kb on + strand, within SMa0702 at 380.314 kb on - strand, within SMa0702 at 380.347 kb on - strand, within SMa0702 at 380.562 kb on + strand at 380.563 kb on - strand at 380.664 kb on + strand at 380.665 kb on - strand at 380.731 kb on + strand at 380.732 kb on - strand at 380.967 kb on + strand at 381.076 kb on - strand, within SMa0705 at 381.153 kb on - strand, within SMa0705 at 381.381 kb on + strand, within SMa0705 at 381.382 kb on - strand, within SMa0705 at 381.382 kb on - strand, within SMa0705 at 381.473 kb on + strand, within SMa0705 at 381.473 kb on + strand, within SMa0705 at 381.474 kb on - strand, within SMa0705
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 379,117 + +0.0 379,121 + -1.1 379,122 - -0.6 379,122 - +0.0 379,122 - -0.4 379,191 - -0.2 379,191 - +0.5 379,191 - +0.0 379,191 - +0.3 379,232 + SMa0699 0.13 +0.6 379,233 - SMa0699 0.13 +0.1 379,233 - SMa0699 0.13 +0.7 379,291 + SMa0699 0.25 -0.1 379,325 - SMa0699 0.32 +0.3 379,325 - SMa0699 0.32 +0.2 379,325 - SMa0699 0.32 +0.1 379,419 + SMa0699 0.52 +3.3 379,462 + SMa0699 0.61 -0.7 379,568 + SMa0699 0.84 -0.0 379,568 + SMa0699 0.84 -0.3 379,569 - SMa0699 0.84 +0.4 379,569 - SMa0699 0.84 +2.7 379,569 - SMa0699 0.84 -0.4 379,667 + +0.9 379,730 + +0.0 379,922 + -0.5 379,922 + -0.1 379,923 - -2.7 379,923 - -0.1 379,923 - +0.2 379,969 + -1.7 379,970 - -2.0 379,970 - -0.0 379,970 - -0.9 379,970 - -1.3 379,970 - +0.2 379,970 - -0.1 380,002 - -1.0 380,065 + +0.1 380,065 + +2.6 380,065 + +0.6 380,223 + SMa0702 0.40 +0.6 380,271 + SMa0702 0.51 +0.6 380,271 + SMa0702 0.51 +0.2 380,272 - SMa0702 0.51 +0.4 380,274 + SMa0702 0.52 -1.2 380,274 + SMa0702 0.52 +1.0 380,314 - SMa0702 0.61 +1.1 380,347 - SMa0702 0.69 +1.0 380,562 + -0.0 380,563 - -0.2 380,664 + -0.6 380,665 - -1.1 380,731 + +4.5 380,732 - -1.1 380,967 + -0.3 381,076 - SMa0705 0.12 +0.2 381,153 - SMa0705 0.20 -0.2 381,381 + SMa0705 0.44 -0.9 381,382 - SMa0705 0.44 +0.1 381,382 - SMa0705 0.44 +0.2 381,473 + SMa0705 0.54 -0.2 381,473 + SMa0705 0.54 -0.2 381,474 - SMa0705 0.54 +0.1
Or see this region's nucleotide sequence