Strain Fitness in Sinorhizobium meliloti 1021 around SMa0680

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0678 and SMa0680 are separated by 27 nucleotidesSMa0680 and SMa0682 are separated by 1 nucleotides SMa0678: SMa0678 - putrescine transporter, at 362,667 to 364,025 SMa0678 SMa0680: SMa0680 - amino acid (ornithine, lysine, arginine) decarboxylase, at 364,053 to 366,401 SMa0680 SMa0682: SMa0682 - decarboxylase (lysine, ornithine, arginine), at 366,403 to 368,673 SMa0682 Position (kb) 364 365 366 367Strain fitness (log2 ratio) -2 -1 0 1at 363.255 kb on - strand, within SMa0678at 363.284 kb on - strand, within SMa0678at 363.287 kb on + strand, within SMa0678at 363.288 kb on - strand, within SMa0678at 363.288 kb on - strand, within SMa0678at 363.497 kb on + strand, within SMa0678at 363.593 kb on + strand, within SMa0678at 363.724 kb on + strand, within SMa0678at 363.746 kb on - strand, within SMa0678at 363.775 kb on + strand, within SMa0678at 363.776 kb on - strand, within SMa0678at 363.808 kb on - strand, within SMa0678at 363.808 kb on - strand, within SMa0678at 363.915 kb on + strandat 363.915 kb on + strandat 363.918 kb on + strandat 364.221 kb on + strandat 364.222 kb on - strandat 364.243 kb on + strandat 364.244 kb on - strandat 364.297 kb on + strand, within SMa0680at 364.327 kb on + strand, within SMa0680at 364.328 kb on - strandat 364.415 kb on - strand, within SMa0680at 364.453 kb on + strand, within SMa0680at 364.462 kb on + strand, within SMa0680at 364.494 kb on + strand, within SMa0680at 364.495 kb on - strand, within SMa0680at 364.495 kb on - strand, within SMa0680at 364.605 kb on + strand, within SMa0680at 364.605 kb on + strand, within SMa0680at 364.655 kb on - strand, within SMa0680at 364.713 kb on + strand, within SMa0680at 364.714 kb on - strand, within SMa0680at 364.714 kb on - strand, within SMa0680at 364.733 kb on + strand, within SMa0680at 364.734 kb on - strand, within SMa0680at 364.734 kb on - strand, within SMa0680at 364.734 kb on - strand, within SMa0680at 364.759 kb on + strand, within SMa0680at 364.760 kb on - strand, within SMa0680at 364.760 kb on - strand, within SMa0680at 364.781 kb on - strand, within SMa0680at 365.098 kb on + strand, within SMa0680at 365.099 kb on - strand, within SMa0680at 365.147 kb on + strand, within SMa0680at 365.158 kb on + strand, within SMa0680at 365.158 kb on + strand, within SMa0680at 365.330 kb on - strand, within SMa0680at 365.355 kb on + strand, within SMa0680at 365.359 kb on + strand, within SMa0680at 365.405 kb on - strand, within SMa0680at 365.405 kb on - strand, within SMa0680at 365.405 kb on - strand, within SMa0680at 365.408 kb on + strand, within SMa0680at 365.409 kb on - strand, within SMa0680at 365.420 kb on - strand, within SMa0680at 365.420 kb on - strand, within SMa0680at 365.691 kb on - strand, within SMa0680at 365.731 kb on + strand, within SMa0680at 365.799 kb on + strand, within SMa0680at 365.799 kb on + strand, within SMa0680at 365.864 kb on - strand, within SMa0680at 365.956 kb on + strand, within SMa0680at 365.957 kb on - strand, within SMa0680at 366.034 kb on + strand, within SMa0680at 366.035 kb on - strand, within SMa0680at 366.222 kb on - strandat 366.223 kb on + strandat 366.223 kb on + strandat 366.223 kb on + strandat 366.223 kb on + strandat 366.450 kb on - strandat 366.536 kb on + strandat 366.537 kb on - strandat 366.545 kb on + strandat 366.545 kb on + strandat 366.545 kb on + strandat 366.546 kb on - strandat 366.546 kb on - strandat 366.615 kb on - strandat 366.619 kb on + strandat 366.619 kb on + strandat 366.620 kb on - strandat 366.620 kb on - strandat 366.780 kb on - strand, within SMa0682at 366.828 kb on - strand, within SMa0682at 366.828 kb on - strand, within SMa0682at 366.890 kb on + strand, within SMa0682at 366.891 kb on - strand, within SMa0682at 366.891 kb on - strand, within SMa0682at 366.891 kb on - strand, within SMa0682at 366.891 kb on - strand, within SMa0682at 366.977 kb on + strand, within SMa0682at 367.312 kb on + strand, within SMa0682at 367.379 kb on + strand, within SMa0682

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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363,255 - SMa0678 0.43 +0.3
363,284 - SMa0678 0.45 +0.0
363,287 + SMa0678 0.46 -0.3
363,288 - SMa0678 0.46 -1.3
363,288 - SMa0678 0.46 +0.3
363,497 + SMa0678 0.61 -0.2
363,593 + SMa0678 0.68 -1.1
363,724 + SMa0678 0.78 +1.3
363,746 - SMa0678 0.79 -0.3
363,775 + SMa0678 0.82 +0.6
363,776 - SMa0678 0.82 +0.1
363,808 - SMa0678 0.84 -0.4
363,808 - SMa0678 0.84 -0.3
363,915 + -0.5
363,915 + +0.2
363,918 + +0.3
364,221 + -0.6
364,222 - +0.7
364,243 + -0.5
364,244 - +1.3
364,297 + SMa0680 0.10 +0.9
364,327 + SMa0680 0.12 -0.5
364,328 - -0.5
364,415 - SMa0680 0.15 -0.7
364,453 + SMa0680 0.17 -0.5
364,462 + SMa0680 0.17 +1.0
364,494 + SMa0680 0.19 +0.8
364,495 - SMa0680 0.19 +0.4
364,495 - SMa0680 0.19 +0.5
364,605 + SMa0680 0.23 -0.5
364,605 + SMa0680 0.23 -0.3
364,655 - SMa0680 0.26 +0.5
364,713 + SMa0680 0.28 -0.8
364,714 - SMa0680 0.28 +0.2
364,714 - SMa0680 0.28 +0.6
364,733 + SMa0680 0.29 -0.9
364,734 - SMa0680 0.29 -0.3
364,734 - SMa0680 0.29 +0.6
364,734 - SMa0680 0.29 +0.5
364,759 + SMa0680 0.30 -0.8
364,760 - SMa0680 0.30 +0.4
364,760 - SMa0680 0.30 +1.6
364,781 - SMa0680 0.31 +0.0
365,098 + SMa0680 0.44 +0.3
365,099 - SMa0680 0.45 -1.8
365,147 + SMa0680 0.47 +0.2
365,158 + SMa0680 0.47 +0.3
365,158 + SMa0680 0.47 -0.8
365,330 - SMa0680 0.54 +0.5
365,355 + SMa0680 0.55 +0.3
365,359 + SMa0680 0.56 -1.4
365,405 - SMa0680 0.58 -0.2
365,405 - SMa0680 0.58 -0.6
365,405 - SMa0680 0.58 -0.0
365,408 + SMa0680 0.58 -1.6
365,409 - SMa0680 0.58 -0.8
365,420 - SMa0680 0.58 +0.1
365,420 - SMa0680 0.58 +0.1
365,691 - SMa0680 0.70 +0.9
365,731 + SMa0680 0.71 -1.3
365,799 + SMa0680 0.74 -1.5
365,799 + SMa0680 0.74 +0.5
365,864 - SMa0680 0.77 -0.0
365,956 + SMa0680 0.81 -1.2
365,957 - SMa0680 0.81 +0.0
366,034 + SMa0680 0.84 +0.2
366,035 - SMa0680 0.84 +0.4
366,222 - -0.2
366,223 + -0.2
366,223 + +0.0
366,223 + -0.0
366,223 + -2.3
366,450 - +0.0
366,536 + -0.4
366,537 - +0.3
366,545 + -0.3
366,545 + +0.7
366,545 + +0.0
366,546 - -2.4
366,546 - +0.9
366,615 - -0.5
366,619 + +0.3
366,619 + +0.9
366,620 - +0.9
366,620 - -0.3
366,780 - SMa0682 0.17 -0.4
366,828 - SMa0682 0.19 -0.1
366,828 - SMa0682 0.19 -2.4
366,890 + SMa0682 0.21 +0.5
366,891 - SMa0682 0.21 -0.4
366,891 - SMa0682 0.21 +0.2
366,891 - SMa0682 0.21 -1.0
366,891 - SMa0682 0.21 +0.8
366,977 + SMa0682 0.25 +1.0
367,312 + SMa0682 0.40 -0.3
367,379 + SMa0682 0.43 -0.5

Or see this region's nucleotide sequence