Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0483 and SMa0485 are separated by 52 nucleotides SMa0485 and SMa0486 are separated by 64 nucleotides
SMa0483: SMa0483 - Phosphatase, at 263,506 to 264,432
SMa0483
SMa0485: SMa0485 - threonine synthase, at 264,485 to 265,939
SMa0485
SMa0486: SMa0486 - ornithine cyclodeaminase, at 266,004 to 266,954
SMa0486
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.507 kb on + strand at 263.507 kb on + strand at 263.547 kb on + strand at 263.547 kb on + strand at 263.584 kb on - strand at 263.584 kb on - strand at 263.657 kb on + strand, within SMa0483 at 263.657 kb on + strand, within SMa0483 at 263.658 kb on - strand, within SMa0483 at 263.665 kb on + strand, within SMa0483 at 263.666 kb on - strand, within SMa0483 at 263.677 kb on + strand, within SMa0483 at 263.704 kb on + strand, within SMa0483 at 263.818 kb on + strand, within SMa0483 at 263.857 kb on - strand, within SMa0483 at 263.894 kb on - strand, within SMa0483 at 264.109 kb on + strand, within SMa0483 at 264.558 kb on - strand at 264.558 kb on - strand at 264.559 kb on + strand at 264.559 kb on + strand at 264.559 kb on + strand at 264.559 kb on + strand at 264.559 kb on + strand at 264.560 kb on - strand at 264.560 kb on - strand at 264.560 kb on - strand at 264.560 kb on - strand at 264.560 kb on - strand at 264.597 kb on - strand at 264.771 kb on + strand, within SMa0485 at 264.772 kb on - strand, within SMa0485 at 264.772 kb on - strand, within SMa0485 at 264.954 kb on + strand, within SMa0485 at 264.956 kb on + strand, within SMa0485 at 264.988 kb on + strand, within SMa0485 at 265.054 kb on + strand, within SMa0485 at 265.206 kb on + strand, within SMa0485 at 265.212 kb on + strand, within SMa0485 at 265.218 kb on + strand, within SMa0485 at 265.626 kb on - strand, within SMa0485 at 265.628 kb on + strand, within SMa0485 at 265.628 kb on + strand, within SMa0485 at 265.628 kb on + strand, within SMa0485 at 265.629 kb on - strand, within SMa0485 at 265.629 kb on - strand, within SMa0485 at 265.629 kb on - strand, within SMa0485 at 265.629 kb on - strand, within SMa0485 at 265.632 kb on + strand, within SMa0485 at 265.632 kb on + strand, within SMa0485 at 265.633 kb on - strand, within SMa0485 at 265.633 kb on - strand, within SMa0485 at 265.633 kb on - strand, within SMa0485 at 265.633 kb on - strand, within SMa0485 at 265.695 kb on + strand, within SMa0485 at 265.789 kb on + strand, within SMa0485 at 265.924 kb on + strand at 265.925 kb on - strand at 265.925 kb on - strand at 265.929 kb on + strand at 265.929 kb on + strand at 265.929 kb on + strand at 265.930 kb on - strand at 265.930 kb on - strand at 265.994 kb on + strand at 265.994 kb on + strand at 265.995 kb on - strand at 266.082 kb on - strand at 266.121 kb on + strand, within SMa0486 at 266.331 kb on - strand, within SMa0486 at 266.331 kb on - strand, within SMa0486 at 266.405 kb on + strand, within SMa0486 at 266.569 kb on - strand, within SMa0486 at 266.587 kb on + strand, within SMa0486 at 266.782 kb on + strand, within SMa0486 at 266.795 kb on + strand, within SMa0486 at 266.796 kb on - strand, within SMa0486 at 266.866 kb on + strand at 266.925 kb on + strand at 266.926 kb on - strand at 266.926 kb on - strand at 266.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 263,507 + -1.8 263,507 + +1.3 263,547 + -0.0 263,547 + -0.2 263,584 - +0.0 263,584 - -0.9 263,657 + SMa0483 0.16 -0.5 263,657 + SMa0483 0.16 -1.7 263,658 - SMa0483 0.16 -0.1 263,665 + SMa0483 0.17 -0.5 263,666 - SMa0483 0.17 +0.1 263,677 + SMa0483 0.18 -1.0 263,704 + SMa0483 0.21 +1.0 263,818 + SMa0483 0.34 +0.1 263,857 - SMa0483 0.38 -1.1 263,894 - SMa0483 0.42 -0.3 264,109 + SMa0483 0.65 +0.4 264,558 - +0.5 264,558 - -0.6 264,559 + -0.4 264,559 + -0.6 264,559 + -0.7 264,559 + -0.5 264,559 + -1.3 264,560 - +1.3 264,560 - -0.4 264,560 - +0.3 264,560 - +0.4 264,560 - +0.2 264,597 - -0.6 264,771 + SMa0485 0.20 +1.6 264,772 - SMa0485 0.20 -0.5 264,772 - SMa0485 0.20 +0.6 264,954 + SMa0485 0.32 +0.1 264,956 + SMa0485 0.32 -0.8 264,988 + SMa0485 0.35 +0.3 265,054 + SMa0485 0.39 +0.2 265,206 + SMa0485 0.50 -0.4 265,212 + SMa0485 0.50 -0.9 265,218 + SMa0485 0.50 -0.2 265,626 - SMa0485 0.78 +0.2 265,628 + SMa0485 0.79 -0.8 265,628 + SMa0485 0.79 +1.0 265,628 + SMa0485 0.79 -0.0 265,629 - SMa0485 0.79 -0.9 265,629 - SMa0485 0.79 +1.3 265,629 - SMa0485 0.79 -0.3 265,629 - SMa0485 0.79 +0.1 265,632 + SMa0485 0.79 -0.4 265,632 + SMa0485 0.79 +0.3 265,633 - SMa0485 0.79 +0.6 265,633 - SMa0485 0.79 +0.0 265,633 - SMa0485 0.79 -0.4 265,633 - SMa0485 0.79 -0.7 265,695 + SMa0485 0.83 +0.4 265,789 + SMa0485 0.90 +0.4 265,924 + -0.8 265,925 - -0.3 265,925 - +1.9 265,929 + +0.0 265,929 + +0.2 265,929 + +2.1 265,930 - -1.6 265,930 - -0.0 265,994 + +0.5 265,994 + -0.5 265,995 - +0.3 266,082 - -0.1 266,121 + SMa0486 0.12 +0.3 266,331 - SMa0486 0.34 -0.6 266,331 - SMa0486 0.34 +1.3 266,405 + SMa0486 0.42 -1.8 266,569 - SMa0486 0.59 +0.3 266,587 + SMa0486 0.61 -0.5 266,782 + SMa0486 0.82 +1.1 266,795 + SMa0486 0.83 +0.3 266,796 - SMa0486 0.83 -0.5 266,866 + +1.3 266,925 + +0.5 266,926 - -2.0 266,926 - +0.5 266,926 - +0.0
Or see this region's nucleotide sequence