Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0426 and SMa0429 are separated by 293 nucleotides SMa0429 and SMa0431 overlap by 8 nucleotides
SMa0426: SMa0426 - hypothetical protein, at 230,327 to 231,133
SMa0426
SMa0429: SMa0429 - hypothetical protein, at 231,427 to 232,443
SMa0429
SMa0431: SMa0431 - hypothetical protein, at 232,436 to 233,029
SMa0431
Position (kb) 231
232
233 Strain fitness (log2 ratio) -1
0
1
2
3 at 230.598 kb on + strand, within SMa0426 at 230.599 kb on - strand, within SMa0426 at 230.599 kb on - strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.797 kb on - strand, within SMa0426 at 230.797 kb on - strand, within SMa0426 at 230.803 kb on + strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.822 kb on + strand, within SMa0426 at 230.822 kb on + strand, within SMa0426 at 230.823 kb on - strand, within SMa0426 at 230.934 kb on + strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 231.029 kb on - strand, within SMa0426 at 231.029 kb on - strand, within SMa0426 at 231.105 kb on + strand at 231.106 kb on - strand at 231.263 kb on + strand at 231.263 kb on + strand at 231.417 kb on - strand at 231.428 kb on + strand at 231.428 kb on + strand at 231.429 kb on - strand at 231.448 kb on - strand at 231.448 kb on - strand at 231.543 kb on - strand, within SMa0429 at 231.609 kb on - strand, within SMa0429 at 231.995 kb on + strand, within SMa0429 at 232.005 kb on - strand at 232.250 kb on + strand, within SMa0429 at 232.250 kb on + strand, within SMa0429 at 232.863 kb on + strand, within SMa0431 at 233.176 kb on + strand at 233.184 kb on + strand at 233.218 kb on - strand at 233.342 kb on + strand at 233.414 kb on - strand at 233.414 kb on - strand at 233.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 230,598 + SMa0426 0.34 +0.2 230,599 - SMa0426 0.34 +0.8 230,599 - SMa0426 0.34 +0.7 230,796 + SMa0426 0.58 -0.0 230,796 + SMa0426 0.58 -0.8 230,796 + SMa0426 0.58 -0.2 230,797 - SMa0426 0.58 +0.5 230,797 - SMa0426 0.58 -0.8 230,803 + SMa0426 0.59 -0.5 230,804 - SMa0426 0.59 -0.6 230,804 - SMa0426 0.59 -0.9 230,804 - SMa0426 0.59 -0.3 230,822 + SMa0426 0.61 -0.2 230,822 + SMa0426 0.61 -1.1 230,823 - SMa0426 0.61 -0.1 230,934 + SMa0426 0.75 -0.5 230,989 - SMa0426 0.82 +0.3 230,989 - SMa0426 0.82 -0.6 230,989 - SMa0426 0.82 -0.2 231,029 - SMa0426 0.87 +0.8 231,029 - SMa0426 0.87 -0.2 231,105 + -0.6 231,106 - +0.7 231,263 + -1.3 231,263 + -0.0 231,417 - +0.1 231,428 + +0.1 231,428 + +0.3 231,429 - +0.1 231,448 - +0.7 231,448 - +0.2 231,543 - SMa0429 0.11 -1.6 231,609 - SMa0429 0.18 +0.3 231,995 + SMa0429 0.56 +0.0 232,005 - +2.9 232,250 + SMa0429 0.81 +0.2 232,250 + SMa0429 0.81 -0.1 232,863 + SMa0431 0.72 +0.6 233,176 + +0.2 233,184 + -0.2 233,218 - +0.1 233,342 + -0.1 233,414 - +0.3 233,414 - -0.2 233,419 - +0.2
Or see this region's nucleotide sequence