Strain Fitness in Sinorhizobium meliloti 1021 around SMa0306

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0303 and SMa0306 are separated by 92 nucleotidesSMa0306 and SMa0307 are separated by 340 nucleotides SMa0303: SMa0303 - LysR family transcriptional regulator, at 169,064 to 169,942 SMa0303 SMa0306: SMa0306 - histidine ammonia-lyase, at 170,035 to 171,675 SMa0306 SMa0307: SMa0307 - LysR family transcriptional regulator, at 172,016 to 173,002 SMa0307 Position (kb) 170 171 172Strain fitness (log2 ratio) -2 -1 0 1 2 3at 169.272 kb on - strand, within SMa0303at 169.272 kb on - strand, within SMa0303at 169.368 kb on - strand, within SMa0303at 169.368 kb on - strand, within SMa0303at 169.368 kb on - strand, within SMa0303at 169.396 kb on - strand, within SMa0303at 169.506 kb on - strand, within SMa0303at 169.506 kb on - strand, within SMa0303at 169.506 kb on - strand, within SMa0303at 169.507 kb on + strand, within SMa0303at 169.507 kb on + strand, within SMa0303at 169.508 kb on - strand, within SMa0303at 169.508 kb on - strand, within SMa0303at 169.538 kb on + strand, within SMa0303at 169.539 kb on - strand, within SMa0303at 169.726 kb on + strand, within SMa0303at 169.805 kb on - strand, within SMa0303at 169.805 kb on - strand, within SMa0303at 169.866 kb on - strandat 169.866 kb on - strandat 170.052 kb on - strandat 170.110 kb on + strandat 170.119 kb on + strandat 170.119 kb on + strandat 170.120 kb on - strandat 170.269 kb on - strand, within SMa0306at 170.269 kb on - strand, within SMa0306at 170.269 kb on - strand, within SMa0306at 170.451 kb on + strand, within SMa0306at 170.451 kb on + strand, within SMa0306at 170.452 kb on - strand, within SMa0306at 170.452 kb on - strand, within SMa0306at 170.500 kb on - strand, within SMa0306at 170.513 kb on - strand, within SMa0306at 170.516 kb on - strand, within SMa0306at 170.516 kb on - strand, within SMa0306at 170.697 kb on + strand, within SMa0306at 170.698 kb on - strand, within SMa0306at 170.698 kb on - strand, within SMa0306at 170.792 kb on - strand, within SMa0306at 170.792 kb on - strand, within SMa0306at 170.795 kb on + strand, within SMa0306at 170.795 kb on + strand, within SMa0306at 170.796 kb on - strand, within SMa0306at 170.796 kb on - strand, within SMa0306at 170.796 kb on - strand, within SMa0306at 170.921 kb on + strand, within SMa0306at 170.938 kb on - strand, within SMa0306at 170.991 kb on - strand, within SMa0306at 170.991 kb on - strand, within SMa0306at 171.096 kb on - strand, within SMa0306at 171.096 kb on - strand, within SMa0306at 171.151 kb on - strand, within SMa0306at 171.203 kb on + strand, within SMa0306at 171.390 kb on + strand, within SMa0306at 171.391 kb on - strand, within SMa0306at 171.456 kb on - strand, within SMa0306at 171.497 kb on + strand, within SMa0306at 171.497 kb on + strand, within SMa0306at 171.498 kb on - strand, within SMa0306at 171.631 kb on + strandat 171.667 kb on + strandat 171.783 kb on + strandat 171.787 kb on + strandat 171.788 kb on - strandat 172.008 kb on - strandat 172.184 kb on + strand, within SMa0307at 172.378 kb on + strand, within SMa0307at 172.379 kb on - strand, within SMa0307at 172.379 kb on - strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.381 kb on - strand, within SMa0307at 172.381 kb on - strand, within SMa0307at 172.381 kb on - strand, within SMa0307at 172.436 kb on + strand, within SMa0307at 172.437 kb on - strand, within SMa0307at 172.437 kb on - strand, within SMa0307at 172.437 kb on - strand, within SMa0307at 172.437 kb on - strand, within SMa0307at 172.439 kb on + strand, within SMa0307at 172.440 kb on - strand, within SMa0307at 172.488 kb on + strand, within SMa0307at 172.489 kb on - strand, within SMa0307at 172.489 kb on - strand, within SMa0307

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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169,272 - SMa0303 0.24 +0.2
169,272 - SMa0303 0.24 -2.1
169,368 - SMa0303 0.35 +0.7
169,368 - SMa0303 0.35 +0.6
169,368 - SMa0303 0.35 -0.5
169,396 - SMa0303 0.38 -0.4
169,506 - SMa0303 0.50 +0.7
169,506 - SMa0303 0.50 -0.1
169,506 - SMa0303 0.50 -0.7
169,507 + SMa0303 0.50 -2.1
169,507 + SMa0303 0.50 -0.1
169,508 - SMa0303 0.51 +0.2
169,508 - SMa0303 0.51 -1.9
169,538 + SMa0303 0.54 -0.0
169,539 - SMa0303 0.54 -0.3
169,726 + SMa0303 0.75 -2.3
169,805 - SMa0303 0.84 -2.3
169,805 - SMa0303 0.84 +0.7
169,866 - +3.4
169,866 - -0.6
170,052 - -2.3
170,110 + -0.4
170,119 + -0.1
170,119 + +0.7
170,120 - +0.3
170,269 - SMa0306 0.14 +2.1
170,269 - SMa0306 0.14 +0.6
170,269 - SMa0306 0.14 +0.1
170,451 + SMa0306 0.25 +0.1
170,451 + SMa0306 0.25 -0.2
170,452 - SMa0306 0.25 +0.4
170,452 - SMa0306 0.25 -0.2
170,500 - SMa0306 0.28 +0.2
170,513 - SMa0306 0.29 -0.3
170,516 - SMa0306 0.29 -0.6
170,516 - SMa0306 0.29 -0.4
170,697 + SMa0306 0.40 -0.6
170,698 - SMa0306 0.40 +0.8
170,698 - SMa0306 0.40 -1.0
170,792 - SMa0306 0.46 -1.1
170,792 - SMa0306 0.46 +0.4
170,795 + SMa0306 0.46 -0.5
170,795 + SMa0306 0.46 -0.2
170,796 - SMa0306 0.46 -0.7
170,796 - SMa0306 0.46 +1.0
170,796 - SMa0306 0.46 -0.3
170,921 + SMa0306 0.54 -0.2
170,938 - SMa0306 0.55 +0.2
170,991 - SMa0306 0.58 -0.1
170,991 - SMa0306 0.58 -1.0
171,096 - SMa0306 0.65 +0.2
171,096 - SMa0306 0.65 -2.2
171,151 - SMa0306 0.68 +0.2
171,203 + SMa0306 0.71 +0.6
171,390 + SMa0306 0.83 -0.2
171,391 - SMa0306 0.83 -0.3
171,456 - SMa0306 0.87 -0.3
171,497 + SMa0306 0.89 +0.8
171,497 + SMa0306 0.89 -0.8
171,498 - SMa0306 0.89 -0.9
171,631 + +0.1
171,667 + +0.7
171,783 + -0.2
171,787 + -0.2
171,788 - +0.6
172,008 - +0.7
172,184 + SMa0307 0.17 -0.6
172,378 + SMa0307 0.37 +1.3
172,379 - SMa0307 0.37 +1.8
172,379 - SMa0307 0.37 +0.8
172,380 + SMa0307 0.37 +0.7
172,380 + SMa0307 0.37 -0.4
172,380 + SMa0307 0.37 +0.0
172,380 + SMa0307 0.37 +0.2
172,380 + SMa0307 0.37 +0.1
172,380 + SMa0307 0.37 +0.7
172,380 + SMa0307 0.37 +3.0
172,381 - SMa0307 0.37 -0.0
172,381 - SMa0307 0.37 +0.2
172,381 - SMa0307 0.37 -1.1
172,436 + SMa0307 0.43 +0.6
172,437 - SMa0307 0.43 -0.6
172,437 - SMa0307 0.43 -0.3
172,437 - SMa0307 0.43 +0.2
172,437 - SMa0307 0.43 +0.1
172,439 + SMa0307 0.43 -0.5
172,440 - SMa0307 0.43 -1.4
172,488 + SMa0307 0.48 +0.3
172,489 - SMa0307 0.48 +0.1
172,489 - SMa0307 0.48 -0.2

Or see this region's nucleotide sequence