Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0265 and SMa0267 are separated by 94 nucleotides SMa0267 and SMa0270 overlap by 4 nucleotides SMa0270 and SMa0271 overlap by 35 nucleotides SMa0271 and SMa0273 are separated by 29 nucleotides
SMa0265: SMa0265 - dehydrogenase, at 149,384 to 150,388
SMa0265
SMa0267: SMa0267 - GntR family transcriptional regulator, at 150,483 to 151,175
SMa0267
SMa0270: SMa0270 - ABC transporter ATP-binding protein, at 151,172 to 152,764
SMa0270
SMa0271: SMa0271 - ABC transporter permease, at 152,730 to 153,725
SMa0271
SMa0273: SMa0273 - ABC transporter substrate-binding protein, at 153,755 to 154,720
SMa0273
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 150.461 kb on + strand at 150.469 kb on + strand at 150.487 kb on + strand at 150.558 kb on + strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.581 kb on + strand, within SMa0267 at 150.593 kb on + strand, within SMa0267 at 150.594 kb on - strand, within SMa0267 at 150.725 kb on + strand, within SMa0267 at 150.726 kb on - strand, within SMa0267 at 150.821 kb on + strand, within SMa0267 at 150.897 kb on - strand, within SMa0267 at 150.906 kb on + strand, within SMa0267 at 151.114 kb on - strand at 151.260 kb on - strand at 151.465 kb on - strand, within SMa0270 at 151.720 kb on + strand, within SMa0270 at 151.721 kb on - strand, within SMa0270 at 151.802 kb on + strand, within SMa0270 at 151.802 kb on + strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.952 kb on + strand, within SMa0270 at 151.960 kb on + strand, within SMa0270 at 152.194 kb on - strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.214 kb on - strand, within SMa0270 at 152.214 kb on - strand, within SMa0270 at 152.269 kb on + strand, within SMa0270 at 152.270 kb on - strand, within SMa0270 at 152.293 kb on + strand, within SMa0270 at 152.430 kb on + strand, within SMa0270 at 152.430 kb on + strand, within SMa0270 at 152.523 kb on - strand, within SMa0270 at 152.596 kb on - strand, within SMa0270 at 152.684 kb on + strand at 152.762 kb on + strand at 152.763 kb on - strand at 152.824 kb on + strand at 152.824 kb on + strand at 152.825 kb on - strand at 152.825 kb on - strand at 153.104 kb on + strand, within SMa0271 at 153.232 kb on - strand, within SMa0271 at 153.233 kb on + strand, within SMa0271 at 153.234 kb on - strand, within SMa0271 at 153.234 kb on - strand, within SMa0271 at 153.244 kb on - strand, within SMa0271 at 153.322 kb on - strand, within SMa0271 at 153.333 kb on + strand, within SMa0271 at 153.334 kb on - strand, within SMa0271 at 153.334 kb on - strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.463 kb on - strand, within SMa0271 at 153.463 kb on - strand, within SMa0271 at 153.651 kb on + strand at 153.651 kb on + strand at 153.711 kb on - strand at 153.763 kb on + strand at 153.763 kb on + strand at 153.764 kb on - strand at 153.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 150,461 + -0.8 150,469 + -0.7 150,487 + -0.1 150,558 + SMa0267 0.11 -1.7 150,571 - SMa0267 0.13 +0.8 150,571 - SMa0267 0.13 +1.0 150,571 - SMa0267 0.13 +0.8 150,571 - SMa0267 0.13 +0.7 150,581 + SMa0267 0.14 -0.0 150,593 + SMa0267 0.16 -0.6 150,594 - SMa0267 0.16 -1.0 150,725 + SMa0267 0.35 +0.1 150,726 - SMa0267 0.35 +3.1 150,821 + SMa0267 0.49 +0.2 150,897 - SMa0267 0.60 +1.3 150,906 + SMa0267 0.61 +0.2 151,114 - +1.8 151,260 - +0.9 151,465 - SMa0270 0.18 +0.8 151,720 + SMa0270 0.34 -2.1 151,721 - SMa0270 0.34 -0.1 151,802 + SMa0270 0.40 +0.2 151,802 + SMa0270 0.40 -0.2 151,803 - SMa0270 0.40 -0.2 151,803 - SMa0270 0.40 -0.6 151,803 - SMa0270 0.40 +0.7 151,952 + SMa0270 0.49 +0.5 151,960 + SMa0270 0.49 +0.4 152,194 - SMa0270 0.64 -1.8 152,213 + SMa0270 0.65 +0.8 152,213 + SMa0270 0.65 +0.1 152,213 + SMa0270 0.65 +0.3 152,214 - SMa0270 0.65 +0.1 152,214 - SMa0270 0.65 +0.7 152,269 + SMa0270 0.69 -0.3 152,270 - SMa0270 0.69 -0.3 152,293 + SMa0270 0.70 +1.1 152,430 + SMa0270 0.79 +0.1 152,430 + SMa0270 0.79 +1.0 152,523 - SMa0270 0.85 -0.6 152,596 - SMa0270 0.89 +0.9 152,684 + +1.9 152,762 + +0.1 152,763 - +0.7 152,824 + +0.1 152,824 + -0.0 152,825 - +0.3 152,825 - +0.9 153,104 + SMa0271 0.38 +0.5 153,232 - SMa0271 0.50 -0.4 153,233 + SMa0271 0.51 -0.9 153,234 - SMa0271 0.51 -0.9 153,234 - SMa0271 0.51 -0.7 153,244 - SMa0271 0.52 -0.6 153,322 - SMa0271 0.59 +1.4 153,333 + SMa0271 0.61 +0.2 153,334 - SMa0271 0.61 -0.1 153,334 - SMa0271 0.61 +0.1 153,462 + SMa0271 0.73 -0.9 153,462 + SMa0271 0.73 +0.6 153,462 + SMa0271 0.73 +0.1 153,463 - SMa0271 0.74 -0.4 153,463 - SMa0271 0.74 +0.4 153,651 + +1.0 153,651 + +1.1 153,711 - +0.7 153,763 + -0.7 153,763 + +0.1 153,764 - -0.8 153,764 - +0.3
Or see this region's nucleotide sequence