Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0179 and SMa0180 are separated by 117 nucleotides
SMa0179: SMa0179 - LysR family transcriptional regulator, at 98,400 to 99,317
SMa0179
SMa0180: SMa0180 - epimerase, at 99,435 to 100,307
SMa0180
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 97.558 kb on + strand at 97.559 kb on - strand at 97.563 kb on - strand at 97.563 kb on - strand at 97.563 kb on - strand at 97.606 kb on - strand at 97.646 kb on + strand at 97.647 kb on - strand at 97.647 kb on - strand at 97.677 kb on + strand at 97.698 kb on + strand at 97.698 kb on + strand at 97.698 kb on + strand at 97.699 kb on - strand at 97.751 kb on - strand at 97.865 kb on - strand at 97.866 kb on + strand at 97.867 kb on - strand at 97.867 kb on - strand at 97.867 kb on - strand at 97.877 kb on + strand at 97.877 kb on + strand at 97.878 kb on - strand at 97.954 kb on - strand at 97.954 kb on - strand at 97.972 kb on - strand at 98.056 kb on - strand at 98.056 kb on - strand at 98.056 kb on - strand at 98.063 kb on + strand at 98.063 kb on + strand at 98.063 kb on + strand at 98.093 kb on + strand at 98.093 kb on + strand at 98.094 kb on - strand at 98.095 kb on + strand at 98.096 kb on - strand at 98.208 kb on + strand at 98.324 kb on + strand at 98.373 kb on + strand at 98.516 kb on - strand, within SMa0179 at 98.553 kb on + strand, within SMa0179 at 98.564 kb on + strand, within SMa0179 at 98.672 kb on + strand, within SMa0179 at 98.673 kb on - strand, within SMa0179 at 98.790 kb on + strand, within SMa0179 at 98.844 kb on - strand, within SMa0179 at 99.106 kb on + strand, within SMa0179 at 99.368 kb on + strand at 99.466 kb on + strand at 99.466 kb on + strand at 99.467 kb on - strand at 99.938 kb on + strand, within SMa0180 at 99.938 kb on + strand, within SMa0180 at 100.035 kb on + strand, within SMa0180 at 100.036 kb on - strand, within SMa0180 at 100.041 kb on + strand, within SMa0180 at 100.041 kb on + strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 97,558 + -1.9 97,559 - +1.1 97,563 - -0.9 97,563 - -1.5 97,563 - +1.2 97,606 - -0.1 97,646 + -0.1 97,647 - +0.2 97,647 - -0.0 97,677 + -0.5 97,698 + +1.1 97,698 + +0.6 97,698 + +0.1 97,699 - +0.3 97,751 - -0.1 97,865 - +0.2 97,866 + +0.3 97,867 - +0.1 97,867 - +0.2 97,867 - -0.1 97,877 + -0.6 97,877 + -2.9 97,878 - +1.1 97,954 - -1.2 97,954 - -0.1 97,972 - +0.3 98,056 - -0.4 98,056 - -0.7 98,056 - +0.5 98,063 + +1.7 98,063 + +0.1 98,063 + -0.9 98,093 + +0.0 98,093 + -0.0 98,094 - -0.0 98,095 + -2.5 98,096 - +0.2 98,208 + -0.4 98,324 + -0.4 98,373 + +0.5 98,516 - SMa0179 0.13 +0.2 98,553 + SMa0179 0.17 +0.5 98,564 + SMa0179 0.18 -0.7 98,672 + SMa0179 0.30 +0.2 98,673 - SMa0179 0.30 +1.1 98,790 + SMa0179 0.42 +1.3 98,844 - SMa0179 0.48 -0.7 99,106 + SMa0179 0.77 +1.0 99,368 + -0.6 99,466 + +0.3 99,466 + +0.4 99,467 - +0.6 99,938 + SMa0180 0.58 +0.7 99,938 + SMa0180 0.58 -0.7 100,035 + SMa0180 0.69 +1.4 100,036 - SMa0180 0.69 +0.6 100,041 + SMa0180 0.69 +0.4 100,041 + SMa0180 0.69 -0.2 100,042 - SMa0180 0.70 +0.4 100,042 - SMa0180 0.70 +0.1 100,042 - SMa0180 0.70 -0.6 100,042 - SMa0180 0.70 -2.3 100,042 - SMa0180 0.70 -2.7 100,042 - SMa0180 0.70 -0.3
Or see this region's nucleotide sequence