Strain Fitness in Sinorhizobium meliloti 1021 around SMa0002

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0002 and SMa0005 overlap by 4 nucleotidesSMa0005 and SMa0007 overlap by 23 nucleotides SMa0002: SMa0002 - formate dehydrogenase subunit alpha, at 1,353 to 4,457 SMa0002 SMa0005: SMa0005 - formate dehydrogenase susbunit beta, at 4,454 to 5,446 SMa0005 SMa0007: SMa0007 - formate dehydrogenase subunit gamma, at 5,424 to 6,110 SMa0007 Position (kb) 1 2 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 0.575 kb on + strandat 0.576 kb on - strandat 0.603 kb on + strandat 0.783 kb on + strandat 0.829 kb on + strandat 0.829 kb on + strandat 0.829 kb on + strandat 0.829 kb on + strandat 0.829 kb on + strandat 0.946 kb on + strandat 0.947 kb on - strandat 0.986 kb on + strandat 1.213 kb on - strandat 1.328 kb on + strandat 1.375 kb on + strandat 1.375 kb on + strandat 1.376 kb on - strandat 1.376 kb on - strandat 1.376 kb on - strandat 1.376 kb on - strandat 1.376 kb on - strandat 1.533 kb on + strandat 1.563 kb on + strandat 1.748 kb on + strand, within SMa0002at 1.976 kb on + strand, within SMa0002at 2.056 kb on + strand, within SMa0002at 2.163 kb on + strand, within SMa0002at 2.190 kb on + strand, within SMa0002at 2.191 kb on - strand, within SMa0002at 2.194 kb on - strand, within SMa0002at 2.194 kb on - strand, within SMa0002at 2.194 kb on - strand, within SMa0002at 2.194 kb on - strand, within SMa0002at 2.194 kb on - strand, within SMa0002at 2.247 kb on + strand, within SMa0002at 2.248 kb on - strand, within SMa0002at 2.280 kb on + strand, within SMa0002at 2.280 kb on + strand, within SMa0002at 2.280 kb on + strand, within SMa0002at 2.280 kb on + strand, within SMa0002at 2.281 kb on - strand, within SMa0002at 2.283 kb on - strand, within SMa0002at 2.283 kb on - strand, within SMa0002at 2.283 kb on - strand, within SMa0002at 2.283 kb on - strand, within SMa0002at 2.307 kb on + strand, within SMa0002at 2.307 kb on + strand, within SMa0002at 2.308 kb on - strand, within SMa0002at 2.376 kb on + strand, within SMa0002at 2.376 kb on + strand, within SMa0002at 2.377 kb on - strand, within SMa0002at 2.377 kb on - strand, within SMa0002at 2.397 kb on + strand, within SMa0002at 2.397 kb on + strand, within SMa0002at 2.397 kb on + strand, within SMa0002at 2.397 kb on + strand, within SMa0002at 2.398 kb on - strand, within SMa0002at 2.398 kb on - strand, within SMa0002at 2.491 kb on - strand, within SMa0002at 2.602 kb on - strand, within SMa0002at 2.602 kb on - strand, within SMa0002at 2.681 kb on + strand, within SMa0002at 2.755 kb on + strand, within SMa0002at 2.755 kb on + strand, within SMa0002at 2.820 kb on + strand, within SMa0002at 2.820 kb on + strand, within SMa0002at 2.821 kb on - strand, within SMa0002at 2.821 kb on - strand, within SMa0002at 2.821 kb on - strand, within SMa0002at 2.821 kb on - strand, within SMa0002at 2.821 kb on - strand, within SMa0002at 2.821 kb on - strand, within SMa0002at 2.822 kb on + strand, within SMa0002at 2.822 kb on + strand, within SMa0002at 2.822 kb on + strand, within SMa0002at 2.822 kb on + strand, within SMa0002at 2.823 kb on - strand, within SMa0002at 2.823 kb on - strand, within SMa0002at 2.869 kb on - strand, within SMa0002at 2.912 kb on + strand, within SMa0002at 2.959 kb on - strand, within SMa0002at 2.985 kb on + strand, within SMa0002at 2.986 kb on - strand, within SMa0002at 2.986 kb on - strand, within SMa0002at 3.015 kb on + strand, within SMa0002at 3.015 kb on + strand, within SMa0002at 3.016 kb on - strand, within SMa0002at 3.016 kb on - strand, within SMa0002at 3.016 kb on - strand, within SMa0002at 3.036 kb on + strand, within SMa0002at 3.037 kb on - strand, within SMa0002at 3.211 kb on - strand, within SMa0002at 3.333 kb on + strand, within SMa0002at 3.333 kb on + strand, within SMa0002at 3.333 kb on + strand, within SMa0002at 3.334 kb on - strand, within SMa0002at 3.350 kb on - strand, within SMa0002at 3.372 kb on + strand, within SMa0002at 3.427 kb on - strand, within SMa0002at 3.427 kb on - strand, within SMa0002at 3.635 kb on + strand, within SMa0002at 3.707 kb on + strand, within SMa0002at 3.724 kb on - strand, within SMa0002at 3.773 kb on + strand, within SMa0002at 3.774 kb on - strand, within SMa0002at 3.774 kb on - strand, within SMa0002at 3.774 kb on - strand, within SMa0002at 3.833 kb on + strand, within SMa0002at 3.935 kb on + strand, within SMa0002at 4.106 kb on + strand, within SMa0002at 4.179 kb on - strandat 4.180 kb on + strandat 4.181 kb on - strandat 4.399 kb on - strandat 4.449 kb on - strandat 4.453 kb on + strandat 4.453 kb on + strandat 4.453 kb on + strandat 4.454 kb on - strandat 4.454 kb on - strandat 4.516 kb on + strandat 4.691 kb on + strand, within SMa0005at 4.694 kb on + strand, within SMa0005at 4.695 kb on - strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.697 kb on - strand, within SMa0005at 4.869 kb on - strand, within SMa0005at 4.923 kb on + strand, within SMa0005at 4.976 kb on + strandat 4.977 kb on - strandat 4.977 kb on - strand, within SMa0005at 5.126 kb on + strand, within SMa0005at 5.128 kb on + strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.144 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.213 kb on + strand, within SMa0005at 5.213 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.280 kb on - strand, within SMa0005at 5.280 kb on - strand, within SMa0005at 5.280 kb on - strand, within SMa0005

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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575 + -0.5
576 - +0.0
603 + -0.6
783 + +0.0
829 + +0.7
829 + +0.3
829 + -0.4
829 + +0.6
829 + -0.3
946 + -0.4
947 - -0.2
986 + -2.0
1,213 - -0.2
1,328 + -0.9
1,375 + -0.5
1,375 + -0.3
1,376 - -0.5
1,376 - +1.4
1,376 - +0.7
1,376 - +0.6
1,376 - -0.9
1,533 + -0.7
1,563 + -0.2
1,748 + SMa0002 0.13 +2.1
1,976 + SMa0002 0.20 -0.2
2,056 + SMa0002 0.23 -1.2
2,163 + SMa0002 0.26 -0.3
2,190 + SMa0002 0.27 -0.3
2,191 - SMa0002 0.27 -0.5
2,194 - SMa0002 0.27 -1.1
2,194 - SMa0002 0.27 +1.4
2,194 - SMa0002 0.27 +0.0
2,194 - SMa0002 0.27 -0.3
2,194 - SMa0002 0.27 -1.0
2,247 + SMa0002 0.29 -0.1
2,248 - SMa0002 0.29 -0.5
2,280 + SMa0002 0.30 +0.2
2,280 + SMa0002 0.30 -0.9
2,280 + SMa0002 0.30 -0.9
2,280 + SMa0002 0.30 +0.9
2,281 - SMa0002 0.30 +0.3
2,283 - SMa0002 0.30 +0.1
2,283 - SMa0002 0.30 -0.7
2,283 - SMa0002 0.30 +0.7
2,283 - SMa0002 0.30 -0.4
2,307 + SMa0002 0.31 -0.5
2,307 + SMa0002 0.31 +0.6
2,308 - SMa0002 0.31 -0.6
2,376 + SMa0002 0.33 -0.3
2,376 + SMa0002 0.33 -0.3
2,377 - SMa0002 0.33 +0.1
2,377 - SMa0002 0.33 -0.3
2,397 + SMa0002 0.34 -0.3
2,397 + SMa0002 0.34 -0.7
2,397 + SMa0002 0.34 -0.2
2,397 + SMa0002 0.34 -1.0
2,398 - SMa0002 0.34 -1.0
2,398 - SMa0002 0.34 -1.8
2,491 - SMa0002 0.37 +1.0
2,602 - SMa0002 0.40 -1.4
2,602 - SMa0002 0.40 +0.8
2,681 + SMa0002 0.43 -1.1
2,755 + SMa0002 0.45 -0.2
2,755 + SMa0002 0.45 -1.2
2,820 + SMa0002 0.47 -0.4
2,820 + SMa0002 0.47 -0.5
2,821 - SMa0002 0.47 -0.2
2,821 - SMa0002 0.47 -1.1
2,821 - SMa0002 0.47 -0.8
2,821 - SMa0002 0.47 -0.5
2,821 - SMa0002 0.47 -0.4
2,821 - SMa0002 0.47 +0.1
2,822 + SMa0002 0.47 +0.5
2,822 + SMa0002 0.47 +1.2
2,822 + SMa0002 0.47 +0.5
2,822 + SMa0002 0.47 +0.1
2,823 - SMa0002 0.47 -0.3
2,823 - SMa0002 0.47 -0.1
2,869 - SMa0002 0.49 -1.8
2,912 + SMa0002 0.50 -1.3
2,959 - SMa0002 0.52 +2.0
2,985 + SMa0002 0.53 -1.9
2,986 - SMa0002 0.53 -0.1
2,986 - SMa0002 0.53 -0.9
3,015 + SMa0002 0.54 +0.2
3,015 + SMa0002 0.54 -0.7
3,016 - SMa0002 0.54 -0.6
3,016 - SMa0002 0.54 +1.7
3,016 - SMa0002 0.54 +0.3
3,036 + SMa0002 0.54 +0.1
3,037 - SMa0002 0.54 -0.9
3,211 - SMa0002 0.60 -1.3
3,333 + SMa0002 0.64 +0.4
3,333 + SMa0002 0.64 +0.2
3,333 + SMa0002 0.64 -0.6
3,334 - SMa0002 0.64 -1.1
3,350 - SMa0002 0.64 -0.5
3,372 + SMa0002 0.65 +0.0
3,427 - SMa0002 0.67 -0.5
3,427 - SMa0002 0.67 -0.7
3,635 + SMa0002 0.73 -1.5
3,707 + SMa0002 0.76 +2.7
3,724 - SMa0002 0.76 -0.2
3,773 + SMa0002 0.78 +1.4
3,774 - SMa0002 0.78 +1.1
3,774 - SMa0002 0.78 -1.6
3,774 - SMa0002 0.78 +0.3
3,833 + SMa0002 0.80 -0.3
3,935 + SMa0002 0.83 +0.7
4,106 + SMa0002 0.89 +1.0
4,179 - +0.5
4,180 + +0.8
4,181 - +0.3
4,399 - +0.7
4,449 - +0.9
4,453 + -0.1
4,453 + -1.9
4,453 + +0.9
4,454 - +0.5
4,454 - -0.2
4,516 + +3.8
4,691 + SMa0005 0.24 -0.4
4,694 + SMa0005 0.24 +0.2
4,695 - SMa0005 0.24 -0.7
4,696 + SMa0005 0.24 +1.0
4,696 + SMa0005 0.24 +0.1
4,696 + SMa0005 0.24 +0.3
4,696 + SMa0005 0.24 +1.1
4,696 + SMa0005 0.24 -0.5
4,697 - SMa0005 0.24 +0.5
4,869 - SMa0005 0.42 -0.1
4,923 + SMa0005 0.47 -1.1
4,976 + +2.4
4,977 - -0.4
4,977 - SMa0005 0.53 -0.6
5,126 + SMa0005 0.68 -0.4
5,128 + SMa0005 0.68 +0.0
5,129 - SMa0005 0.68 +0.4
5,129 - SMa0005 0.68 -0.2
5,129 - SMa0005 0.68 -0.2
5,144 + SMa0005 0.69 -0.1
5,180 + SMa0005 0.73 -1.4
5,180 + SMa0005 0.73 +0.2
5,180 + SMa0005 0.73 +0.1
5,180 + SMa0005 0.73 -0.1
5,180 + SMa0005 0.73 -0.0
5,180 + SMa0005 0.73 -0.2
5,180 + SMa0005 0.73 +0.5
5,180 + SMa0005 0.73 +0.4
5,180 + SMa0005 0.73 +0.8
5,181 - SMa0005 0.73 +0.3
5,181 - SMa0005 0.73 +0.3
5,181 - SMa0005 0.73 -0.2
5,181 - SMa0005 0.73 +0.3
5,181 - SMa0005 0.73 +0.4
5,181 - SMa0005 0.73 +0.3
5,181 - SMa0005 0.73 -1.1
5,213 + SMa0005 0.76 +1.0
5,213 + SMa0005 0.76 +1.4
5,279 + SMa0005 0.83 +0.2
5,279 + SMa0005 0.83 +1.1
5,279 + SMa0005 0.83 -0.0
5,280 - SMa0005 0.83 -1.3
5,280 - SMa0005 0.83 -0.4
5,280 - SMa0005 0.83 +0.7

Or see this region's nucleotide sequence